Hb_000656_240

Information

Type -
Description -
Location Contig656: 150062-156197
Sequence    

Annotation

kegg
ID rcu:RCOM_0391800
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_002532723.1
description proteasome subunit alpha type, putative [Ricinus communis]
swissprot
ID O48551
description Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2
trembl
ID B9T3A4
description Proteasome subunit alpha type OS=Ricinus communis GN=RCOM_0391800 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52733: 150103-156125
cDNA
(Sanger)
(ID:Location)		 007_B23.ab1: 150103-155668 , 030_L05.ab1: 150103-155863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_240 0.0 - - proteasome subunit alpha type, putative [Ricinus communis]
2 Hb_004116_190 0.0495855724 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
3 Hb_001504_110 0.0540252043 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
4 Hb_001195_480 0.0573177911 - - cop9 complex subunit, putative [Ricinus communis]
5 Hb_011512_070 0.0599304869 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
6 Hb_000580_090 0.0610942232 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
7 Hb_008554_060 0.0640834396 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
8 Hb_002995_020 0.0641212629 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
9 Hb_000667_070 0.065205506 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
10 Hb_001633_050 0.0657957432 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
11 Hb_004109_170 0.0667529748 - - PREDICTED: probable ribokinase [Jatropha curcas]
12 Hb_001123_130 0.067349225 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000205_090 0.0673902196 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
14 Hb_001534_120 0.0698290032 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
15 Hb_002534_150 0.0707818701 - - catalytic, putative [Ricinus communis]
16 Hb_012286_030 0.0709025655 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
17 Hb_001821_010 0.0711467277 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
18 Hb_002226_060 0.0717179061 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
19 Hb_010098_050 0.0717228609 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
20 Hb_001105_030 0.0717937292 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_240 Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_000025_620 Hb_000025_620 Hb_001504_110--Hb_000025_620 Hb_001504_110--Hb_004116_190 Hb_001504_110--Hb_000020_060 Hb_000127_180 Hb_000127_180 Hb_001504_110--Hb_000127_180 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000580_090--Hb_004116_190 Hb_000580_090--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_000580_090--Hb_001105_030 Hb_000589_120 Hb_000589_120 Hb_008554_060--Hb_000589_120 Hb_003064_020 Hb_003064_020 Hb_008554_060--Hb_003064_020 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_000667_070 Hb_000667_070 Hb_008554_060--Hb_000667_070 Hb_008554_060--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.9569 42.6463 76.3498 46.3312 58.7451 67.3045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.1456 141.116 76.2131 55.873 47.0509

CAGE analysis