Hb_000656_320

Information

Type -
Description -
Location Contig656: 272496-273138
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012068866.1
description PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52743: 269341-272965 , PASA_asmbl_52744: 269325-272965 , PASA_asmbl_52745: 272206-272449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_320 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
2 Hb_001329_010 0.1205554718 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006060_010 0.1361792384 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
4 Hb_000936_030 0.1397949628 - - hypothetical protein RCOM_0615680 [Ricinus communis]
5 Hb_013344_010 0.1440740654 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
6 Hb_000577_050 0.1452086028 - - -
7 Hb_014497_070 0.1475952942 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
8 Hb_001377_370 0.1574137276 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
9 Hb_007474_020 0.1602980489 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_024714_090 0.1613086594 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
11 Hb_012150_040 0.1625380512 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002311_090 0.1633145856 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
13 Hb_001755_040 0.1633374145 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
14 Hb_001633_160 0.164027606 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
15 Hb_002205_180 0.1645730378 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
16 Hb_001085_160 0.1655002151 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_004129_060 0.1667455152 - - triacylglycerol lipase, putative [Ricinus communis]
18 Hb_033152_060 0.1675054267 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
19 Hb_000567_290 0.1684525306 - - hypothetical protein RCOM_0303940 [Ricinus communis]
20 Hb_000069_510 0.169296283 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_320 Hb_000656_320 Hb_001329_010 Hb_001329_010 Hb_000656_320--Hb_001329_010 Hb_006060_010 Hb_006060_010 Hb_000656_320--Hb_006060_010 Hb_000936_030 Hb_000936_030 Hb_000656_320--Hb_000936_030 Hb_013344_010 Hb_013344_010 Hb_000656_320--Hb_013344_010 Hb_000577_050 Hb_000577_050 Hb_000656_320--Hb_000577_050 Hb_014497_070 Hb_014497_070 Hb_000656_320--Hb_014497_070 Hb_001329_010--Hb_013344_010 Hb_000556_130 Hb_000556_130 Hb_001329_010--Hb_000556_130 Hb_003813_110 Hb_003813_110 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_006060_010--Hb_013344_010 Hb_001755_040 Hb_001755_040 Hb_000936_030--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_010705_040 Hb_010705_040 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_013344_010--Hb_000960_120 Hb_013344_010--Hb_000260_610 Hb_008406_100 Hb_008406_100 Hb_013344_010--Hb_008406_100 Hb_000577_050--Hb_006060_010 Hb_001775_090 Hb_001775_090 Hb_000577_050--Hb_001775_090 Hb_003599_060 Hb_003599_060 Hb_000577_050--Hb_003599_060 Hb_002217_370 Hb_002217_370 Hb_000577_050--Hb_002217_370 Hb_001541_190 Hb_001541_190 Hb_000577_050--Hb_001541_190 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_014497_070--Hb_001755_040 Hb_014497_070--Hb_002205_180 Hb_014497_070--Hb_002232_310 Hb_000441_210 Hb_000441_210 Hb_014497_070--Hb_000441_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.78119 3.86668 35.7082 21.8837 0.35167 1.29624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.839507 1.32413 0 0.925172 1.49275

CAGE analysis