Hb_000656_340

Information

Type -
Description -
Location Contig656: 278137-280325
Sequence    

Annotation

kegg
ID gmx:100526919
description uncharacterized LOC100526919
nr
ID KDP40687.1
description hypothetical protein JCGZ_24686 [Jatropha curcas]
swissprot
ID Q940X7
description RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
trembl
ID A0A067KX09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24686 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-box protein 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52747: 277976-280371
cDNA
(Sanger)
(ID:Location)		 039_G22.ab1: 278035-280350 , 047_C11.ab1: 278015-280342

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_340 0.0 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
2 Hb_023732_060 0.0972269958 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
3 Hb_140543_010 0.1037488768 - - -
4 Hb_006995_040 0.1203277118 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
5 Hb_020035_020 0.122422733 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
6 Hb_130235_010 0.1313450885 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
7 Hb_000419_130 0.137192781 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
8 Hb_001754_070 0.1413242449 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
9 Hb_003226_220 0.1414286049 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
10 Hb_086703_010 0.1434237398 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
11 Hb_001610_130 0.1442704672 - - 40S ribosomal protein S30 [Medicago truncatula]
12 Hb_001085_010 0.146012419 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
13 Hb_182964_010 0.1472352988 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
14 Hb_172706_030 0.1477026151 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
15 Hb_014834_140 0.1491476271 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
16 Hb_000030_220 0.152787272 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
17 Hb_000840_190 0.1533537064 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
18 Hb_001019_080 0.1540483949 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
19 Hb_003607_170 0.1548798029 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
20 Hb_000212_470 0.1551287725 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]

Gene co-expression network

sample Hb_000656_340 Hb_000656_340 Hb_023732_060 Hb_023732_060 Hb_000656_340--Hb_023732_060 Hb_140543_010 Hb_140543_010 Hb_000656_340--Hb_140543_010 Hb_006995_040 Hb_006995_040 Hb_000656_340--Hb_006995_040 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_021924_010 Hb_021924_010 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_003988_040 Hb_003988_040 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_172706_030 Hb_172706_030 Hb_140543_010--Hb_172706_030 Hb_140543_010--Hb_130235_010 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_182964_010 Hb_182964_010 Hb_006995_040--Hb_182964_010 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_002284_050 Hb_002284_050 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_014834_140 Hb_014834_140 Hb_006995_040--Hb_014834_140 Hb_042710_010 Hb_042710_010 Hb_020035_020--Hb_042710_010 Hb_020035_020--Hb_006995_040 Hb_001610_130 Hb_001610_130 Hb_020035_020--Hb_001610_130 Hb_020035_020--Hb_000419_130 Hb_000493_010 Hb_000493_010 Hb_020035_020--Hb_000493_010 Hb_003018_050 Hb_003018_050 Hb_130235_010--Hb_003018_050 Hb_004125_110 Hb_004125_110 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_130235_010--Hb_001754_070 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.0269 20.692 25.2839 164.177 32.6277 194.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
305.438 281.673 59.0959 74.7811 20.8756

CAGE analysis