Hb_000656_350

Information

Type -
Description -
Location Contig656: 302299-315198
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16780g
description hypothetical protein
nr
ID XP_012068871.1
description PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
swissprot
ID O24371
description Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1
trembl
ID U5GTE9
description Lipoxygenase OS=Populus trichocarpa GN=POPTR_0001s16780g PE=3 SV=1
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52748: 302341-308909 , PASA_asmbl_52749: 307719-307974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_350 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
2 Hb_032260_100 0.0768776518 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
3 Hb_029622_080 0.0834327079 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
4 Hb_000925_110 0.085926537 - - Spotted leaf protein, putative [Ricinus communis]
5 Hb_000571_030 0.0924818423 - - ammonium transporter, putative [Ricinus communis]
6 Hb_000032_150 0.0960439635 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
7 Hb_000808_090 0.0987777544 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
8 Hb_124953_010 0.1007128233 - - hypothetical protein RCOM_1314600 [Ricinus communis]
9 Hb_004586_120 0.1009230578 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
10 Hb_001257_040 0.1102141074 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
11 Hb_096930_010 0.1136903044 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
12 Hb_000529_050 0.1196182455 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_047955_010 0.1222577759 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
14 Hb_001104_270 0.122514793 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
15 Hb_001956_160 0.1227222616 - - hypothetical protein L484_009438 [Morus notabilis]
16 Hb_000627_130 0.1233057675 - - Polcalcin Jun o, putative [Ricinus communis]
17 Hb_001619_140 0.1243310407 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_000322_020 0.1260591236 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
19 Hb_001477_080 0.1262545615 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
20 Hb_000221_280 0.126460225 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]

Gene co-expression network

sample Hb_000656_350 Hb_000656_350 Hb_032260_100 Hb_032260_100 Hb_000656_350--Hb_032260_100 Hb_029622_080 Hb_029622_080 Hb_000656_350--Hb_029622_080 Hb_000925_110 Hb_000925_110 Hb_000656_350--Hb_000925_110 Hb_000571_030 Hb_000571_030 Hb_000656_350--Hb_000571_030 Hb_000032_150 Hb_000032_150 Hb_000656_350--Hb_000032_150 Hb_000808_090 Hb_000808_090 Hb_000656_350--Hb_000808_090 Hb_032260_100--Hb_029622_080 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_032260_100--Hb_000571_030 Hb_029622_080--Hb_000808_090 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040 Hb_002066_050 Hb_002066_050 Hb_000925_110--Hb_002066_050 Hb_004724_310 Hb_004724_310 Hb_000925_110--Hb_004724_310 Hb_000714_080 Hb_000714_080 Hb_000925_110--Hb_000714_080 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_000665_090 Hb_000665_090 Hb_000925_110--Hb_000665_090 Hb_001619_140 Hb_001619_140 Hb_000571_030--Hb_001619_140 Hb_000571_030--Hb_000032_150 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020 Hb_047955_010 Hb_047955_010 Hb_000032_150--Hb_047955_010 Hb_124953_010 Hb_124953_010 Hb_000032_150--Hb_124953_010 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_000032_150--Hb_007858_020 Hb_004032_220 Hb_004032_220 Hb_000032_150--Hb_004032_220 Hb_000808_090--Hb_000665_090 Hb_000627_130 Hb_000627_130 Hb_000808_090--Hb_000627_130 Hb_000808_090--Hb_124953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359083 148.857 57.9323 43.9412 0 0.0279626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0234321 0.0461002 0.0353817 2.49138 7.75676

CAGE analysis