Hb_000656_370

Information

Type -
Description -
Location Contig656: 334258-336160
Sequence    

Annotation

kegg
ID rcu:RCOM_0651870
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002521318.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9S5P9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0651870 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase at1g72540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52750: 334749-335309 , PASA_asmbl_52751: 335580-335882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_370 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_002968_010 0.0568014011 - - PREDICTED: pectinesterase [Jatropha curcas]
3 Hb_000101_140 0.0665879399 - - amino acid transporter, putative [Ricinus communis]
4 Hb_002236_020 0.0715463627 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
5 Hb_145139_010 0.0860322448 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
6 Hb_004122_020 0.0907352488 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
7 Hb_024857_010 0.0934733874 - - glutaredoxin 2.1 [Hevea brasiliensis]
8 Hb_002239_030 0.0984046682 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
9 Hb_060237_010 0.1022526546 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006615_180 0.1029747266 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
11 Hb_000723_060 0.1048596513 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
12 Hb_002475_010 0.1120034654 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
13 Hb_000922_290 0.1168591797 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
14 Hb_000252_190 0.118869683 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
15 Hb_000521_210 0.1199438806 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_000000_070 0.1210017894 - - allene oxide synthase [Hevea brasiliensis]
17 Hb_005147_020 0.1246700003 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
18 Hb_000007_210 0.1285634377 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
19 Hb_000072_160 0.1300523551 - - proline oxidase [Manihot esculenta]
20 Hb_000338_030 0.132140177 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_370 Hb_000656_370 Hb_002968_010 Hb_002968_010 Hb_000656_370--Hb_002968_010 Hb_000101_140 Hb_000101_140 Hb_000656_370--Hb_000101_140 Hb_002236_020 Hb_002236_020 Hb_000656_370--Hb_002236_020 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_000656_370--Hb_004122_020 Hb_024857_010 Hb_024857_010 Hb_000656_370--Hb_024857_010 Hb_002968_010--Hb_000101_140 Hb_002968_010--Hb_145139_010 Hb_002968_010--Hb_004122_020 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002475_010 Hb_002475_010 Hb_002968_010--Hb_002475_010 Hb_000723_060 Hb_000723_060 Hb_000101_140--Hb_000723_060 Hb_002239_030 Hb_002239_030 Hb_000101_140--Hb_002239_030 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_002236_020--Hb_024857_010 Hb_000252_190 Hb_000252_190 Hb_002236_020--Hb_000252_190 Hb_007305_040 Hb_007305_040 Hb_002236_020--Hb_007305_040 Hb_002236_020--Hb_004122_020 Hb_002236_020--Hb_002968_010 Hb_145139_010--Hb_000072_160 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_002272_070 Hb_002272_070 Hb_145139_010--Hb_002272_070 Hb_145139_010--Hb_002475_010 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000252_190 Hb_024857_010--Hb_002239_030 Hb_024857_010--Hb_000101_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.12415 0.111793 0.49919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.219763 0.109346

CAGE analysis