Hb_000656_400

Information

Type -
Description -
Location Contig656: 367828-370379
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16840g
description POPTRDRAFT_709525; TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT
nr
ID XP_012068877.1
description PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
swissprot
ID Q9SYH2
description Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1
trembl
ID A0A067KWX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24695 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor tfiid subunit 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52757: 368432-370379 , PASA_asmbl_52758: 369797-370274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_400 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
2 Hb_003126_080 0.0562989867 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
3 Hb_000920_180 0.0594487117 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
4 Hb_001226_160 0.0623840931 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
5 Hb_118707_030 0.064051241 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
6 Hb_001259_090 0.0655570002 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
7 Hb_001766_110 0.0667324706 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
8 Hb_005993_040 0.0667695859 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
9 Hb_096563_010 0.0673986878 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
10 Hb_001552_020 0.0680537686 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
11 Hb_007590_050 0.0686300687 - - NudC domain-containing protein, putative [Ricinus communis]
12 Hb_000210_180 0.0687021398 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_005357_030 0.0693429665 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
14 Hb_000251_130 0.0701103649 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
15 Hb_005305_080 0.0713107699 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
16 Hb_020956_020 0.0722584503 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
17 Hb_028995_040 0.0728795417 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
18 Hb_019253_020 0.072897903 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
19 Hb_000661_250 0.0735158155 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_159809_020 0.0738144678 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000656_400 Hb_000656_400 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_000056_200 Hb_000056_200 Hb_000920_180--Hb_000056_200 Hb_003929_250 Hb_003929_250 Hb_000920_180--Hb_003929_250 Hb_000120_790 Hb_000120_790 Hb_000920_180--Hb_000120_790 Hb_000920_180--Hb_118707_030 Hb_000920_180--Hb_005993_040 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_002214_040 Hb_002214_040 Hb_118707_030--Hb_002214_040 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620 Hb_000661_250 Hb_000661_250 Hb_001259_090--Hb_000661_250 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_001481_090 Hb_001481_090 Hb_001766_110--Hb_001481_090 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_003952_090 Hb_003952_090 Hb_001766_110--Hb_003952_090 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4908 24.4023 16.6516 16.7135 33.5464 39.9966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.8511 60.6241 30.9507 24.2758 18.8964

CAGE analysis