Hb_000659_010

Information

Type -
Description -
Location Contig659: 6619-13532
Sequence    

Annotation

kegg
ID cic:CICLE_v10024525mg
description hypothetical protein
nr
ID XP_012071365.1
description PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4VPV2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024525mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_010 0.0 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
2 Hb_022815_020 0.0615515468 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
3 Hb_175968_010 0.0716551562 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
4 Hb_004222_010 0.0726195066 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
5 Hb_001003_020 0.0744297154 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
6 Hb_035726_020 0.0917777365 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
7 Hb_001279_220 0.0982314914 - - protein binding protein, putative [Ricinus communis]
8 Hb_004774_060 0.0984298814 - - -
9 Hb_097908_010 0.098974926 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
10 Hb_003189_030 0.1008819798 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
11 Hb_004055_180 0.1041366863 - - cell wall invertase [Manihot esculenta]
12 Hb_000466_090 0.10585352 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
13 Hb_029571_010 0.1141630728 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
14 Hb_001172_030 0.1182511102 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
15 Hb_033363_080 0.119753818 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_000567_300 0.1245575996 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_002248_020 0.1258001934 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
18 Hb_109673_010 0.1323354965 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_012239_080 0.1352079434 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
20 Hb_001464_010 0.138211148 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000659_010 Hb_000659_010 Hb_022815_020 Hb_022815_020 Hb_000659_010--Hb_022815_020 Hb_175968_010 Hb_175968_010 Hb_000659_010--Hb_175968_010 Hb_004222_010 Hb_004222_010 Hb_000659_010--Hb_004222_010 Hb_001003_020 Hb_001003_020 Hb_000659_010--Hb_001003_020 Hb_035726_020 Hb_035726_020 Hb_000659_010--Hb_035726_020 Hb_001279_220 Hb_001279_220 Hb_000659_010--Hb_001279_220 Hb_001172_030 Hb_001172_030 Hb_022815_020--Hb_001172_030 Hb_022815_020--Hb_035726_020 Hb_022815_020--Hb_001003_020 Hb_022815_020--Hb_004222_010 Hb_033843_020 Hb_033843_020 Hb_022815_020--Hb_033843_020 Hb_175968_010--Hb_001279_220 Hb_004774_060 Hb_004774_060 Hb_175968_010--Hb_004774_060 Hb_175968_010--Hb_004222_010 Hb_097908_010 Hb_097908_010 Hb_175968_010--Hb_097908_010 Hb_004055_180 Hb_004055_180 Hb_175968_010--Hb_004055_180 Hb_004222_010--Hb_001003_020 Hb_004222_010--Hb_004055_180 Hb_004222_010--Hb_097908_010 Hb_001003_020--Hb_035726_020 Hb_003189_030 Hb_003189_030 Hb_001003_020--Hb_003189_030 Hb_001003_020--Hb_033843_020 Hb_035726_020--Hb_003189_030 Hb_035726_020--Hb_033843_020 Hb_035726_010 Hb_035726_010 Hb_035726_020--Hb_035726_010 Hb_001279_220--Hb_004774_060 Hb_001454_300 Hb_001454_300 Hb_001279_220--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_001279_220--Hb_001369_320 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0394513 0.135156 0.0858942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.0532 0.237915

CAGE analysis