Hb_000659_030

Information

Type -
Description -
Location Contig659: 23942-25489
Sequence    

Annotation

kegg
ID tcc:TCM_030953
description Pollen Ole e 1 allergen and extensin family protein
nr
ID AIU48402.1
description pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
swissprot
ID -
description -
trembl
ID A0A097PK50
description Pollen Ole e 1 allergen and extensin family protein (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_030 0.0 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
2 Hb_055590_010 0.0778138257 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003464_110 0.0843147578 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
4 Hb_005214_160 0.1101749858 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
5 Hb_001811_150 0.1124482577 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
6 Hb_008406_160 0.1150458899 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
7 Hb_003728_020 0.1159247629 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004221_050 0.1160720247 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
9 Hb_029584_080 0.1196889634 - - serine acetyltransferase [Hevea brasiliensis]
10 Hb_005237_010 0.1200364952 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
11 Hb_000556_020 0.1236951306 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
12 Hb_001057_010 0.1256708902 - - cation-transporting atpase plant, putative [Ricinus communis]
13 Hb_002408_010 0.1260731219 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_000012_090 0.1261644328 - - 3'-5' exonuclease, putative [Ricinus communis]
15 Hb_000879_140 0.1263977108 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
16 Hb_015941_030 0.1279044388 - - unknown [Populus trichocarpa]
17 Hb_000160_170 0.1301719897 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
18 Hb_012654_010 0.1306030886 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
19 Hb_001514_200 0.1312450948 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
20 Hb_000002_330 0.1316200952 - - PREDICTED: actin-related protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000659_030 Hb_000659_030 Hb_055590_010 Hb_055590_010 Hb_000659_030--Hb_055590_010 Hb_003464_110 Hb_003464_110 Hb_000659_030--Hb_003464_110 Hb_005214_160 Hb_005214_160 Hb_000659_030--Hb_005214_160 Hb_001811_150 Hb_001811_150 Hb_000659_030--Hb_001811_150 Hb_008406_160 Hb_008406_160 Hb_000659_030--Hb_008406_160 Hb_003728_020 Hb_003728_020 Hb_000659_030--Hb_003728_020 Hb_055590_010--Hb_003464_110 Hb_000322_050 Hb_000322_050 Hb_055590_010--Hb_000322_050 Hb_055590_010--Hb_003728_020 Hb_000160_170 Hb_000160_170 Hb_055590_010--Hb_000160_170 Hb_055590_010--Hb_008406_160 Hb_003464_110--Hb_000322_050 Hb_003464_110--Hb_008406_160 Hb_003464_110--Hb_003728_020 Hb_003464_110--Hb_001811_150 Hb_012654_010 Hb_012654_010 Hb_005214_160--Hb_012654_010 Hb_000977_180 Hb_000977_180 Hb_005214_160--Hb_000977_180 Hb_009620_040 Hb_009620_040 Hb_005214_160--Hb_009620_040 Hb_007364_010 Hb_007364_010 Hb_005214_160--Hb_007364_010 Hb_004567_100 Hb_004567_100 Hb_005214_160--Hb_004567_100 Hb_002097_090 Hb_002097_090 Hb_005214_160--Hb_002097_090 Hb_001811_150--Hb_003728_020 Hb_003728_030 Hb_003728_030 Hb_001811_150--Hb_003728_030 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_008406_160--Hb_015941_030 Hb_008406_160--Hb_000322_050 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_003728_020--Hb_000322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6257 6.97829 0.942033 2.75836 21.7971 11.7988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2584 10.3124 6.40652 6.95511 3.0531

CAGE analysis