Hb_000659_040

Information

Type -
Description -
Location Contig659: 27484-28624
Sequence    

Annotation

kegg
ID rcu:RCOM_0339660
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.30)
nr
ID XP_012071365.1
description PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T5Y3
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0339660 PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52902: 28390-28684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_040 0.0 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
2 Hb_003147_040 0.0925410364 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
3 Hb_000363_250 0.0997429782 - - PREDICTED: pirin-like protein [Malus domestica]
4 Hb_000272_030 0.1068382805 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
5 Hb_001318_100 0.1068397632 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
6 Hb_000856_200 0.1087664157 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
7 Hb_007894_070 0.1094705184 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
8 Hb_000941_090 0.1103055082 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
9 Hb_002838_010 0.1120549625 - - AGPase large subunit protein [Hevea brasiliensis]
10 Hb_006414_010 0.1120607259 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
11 Hb_031862_120 0.1126554734 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
12 Hb_000069_540 0.1165070554 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
13 Hb_000868_130 0.118025211 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
14 Hb_006570_060 0.1181804393 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
15 Hb_028227_040 0.1184422963 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
16 Hb_000215_290 0.1210051173 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
17 Hb_001486_100 0.121627681 - - tubulin alpha chain, putative [Ricinus communis]
18 Hb_000210_040 0.1226060037 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
19 Hb_000069_690 0.1227823564 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
20 Hb_002902_070 0.1242887157 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]

Gene co-expression network

sample Hb_000659_040 Hb_000659_040 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070 Hb_002095_020 Hb_002095_020 Hb_003147_040--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_003147_040--Hb_001369_390 Hb_002902_070 Hb_002902_070 Hb_003147_040--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_003147_040--Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_003147_040--Hb_000868_130 Hb_000215_290 Hb_000215_290 Hb_000363_250--Hb_000215_290 Hb_144703_010 Hb_144703_010 Hb_000363_250--Hb_144703_010 Hb_005271_180 Hb_005271_180 Hb_000363_250--Hb_005271_180 Hb_001951_230 Hb_001951_230 Hb_000363_250--Hb_001951_230 Hb_000613_250 Hb_000613_250 Hb_000363_250--Hb_000613_250 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_001318_100--Hb_000856_200 Hb_000856_200--Hb_010222_040 Hb_010557_020 Hb_010557_020 Hb_000856_200--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_000856_200--Hb_000290_030 Hb_000856_200--Hb_000473_100 Hb_001046_030 Hb_001046_030 Hb_000856_200--Hb_001046_030 Hb_144449_010 Hb_144449_010 Hb_000856_200--Hb_144449_010 Hb_006414_010 Hb_006414_010 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000227_280 Hb_000227_280 Hb_007894_070--Hb_000227_280 Hb_004241_110 Hb_004241_110 Hb_007894_070--Hb_004241_110 Hb_007894_070--Hb_001318_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022827 4.29297 4.08991 7.68518 0.0213975 0.0656672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156914 0.205682 0.226766 1.93673 6.88796

CAGE analysis