Hb_000659_050

Information

Type -
Description -
Location Contig659: 30823-31896
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21660g
description POPTRDRAFT_815202; basic blue copper family protein
nr
ID XP_012071362.1
description PREDICTED: basic blue protein-like [Jatropha curcas]
swissprot
ID Q8LG89
description Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2
trembl
ID B9GEY2
description Basic blue copper family protein OS=Populus trichocarpa GN=POPTR_0001s21660g PE=4 SV=1
Gene Ontology
ID GO:0009055
description basic blue

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52903: 30908-31758 , PASA_asmbl_52904: 30824-31916
cDNA
(Sanger)
(ID:Location)		 007_J18.ab1: 30910-31819 , 008_L18.ab1: 30826-31172 , 036_C11.ab1: 30824-31773

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_050 0.0 - - PREDICTED: basic blue protein-like [Jatropha curcas]
2 Hb_002869_090 0.042683936 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
3 Hb_000910_030 0.0729677806 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000344_030 0.0735911868 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
5 Hb_000327_100 0.0736864115 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
6 Hb_001675_020 0.0754222253 - - -
7 Hb_002616_020 0.0855503558 - - PREDICTED: peroxidase 3 [Jatropha curcas]
8 Hb_003607_090 0.0862422672 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
9 Hb_000561_040 0.0907560849 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
10 Hb_000352_360 0.1016882996 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
11 Hb_000477_020 0.101694677 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
12 Hb_002007_330 0.1030874961 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
13 Hb_000389_100 0.1061123206 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
14 Hb_027400_020 0.1071543256 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
15 Hb_000419_140 0.1077910503 - - Aquaporin PIP2.1, putative [Ricinus communis]
16 Hb_008731_010 0.1084151057 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
17 Hb_007403_100 0.1099536349 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
18 Hb_001410_080 0.1100828427 - - ring finger protein, putative [Ricinus communis]
19 Hb_000163_170 0.1106147546 - - -
20 Hb_000076_280 0.1132443447 - - PREDICTED: pectinesterase-like [Populus euphratica]

Gene co-expression network

sample Hb_000659_050 Hb_000659_050 Hb_002869_090 Hb_002869_090 Hb_000659_050--Hb_002869_090 Hb_000910_030 Hb_000910_030 Hb_000659_050--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_000659_050--Hb_000344_030 Hb_000327_100 Hb_000327_100 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_002616_020 Hb_002616_020 Hb_000659_050--Hb_002616_020 Hb_002869_090--Hb_002616_020 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_003607_090 Hb_003607_090 Hb_000910_030--Hb_003607_090 Hb_005332_160 Hb_005332_160 Hb_000910_030--Hb_005332_160 Hb_001410_080 Hb_001410_080 Hb_000910_030--Hb_001410_080 Hb_000910_030--Hb_000344_030 Hb_000910_030--Hb_002869_090 Hb_008731_010 Hb_008731_010 Hb_000344_030--Hb_008731_010 Hb_002007_330 Hb_002007_330 Hb_000344_030--Hb_002007_330 Hb_000344_030--Hb_002869_090 Hb_007403_100 Hb_007403_100 Hb_000344_030--Hb_007403_100 Hb_000327_100--Hb_001675_020 Hb_000327_100--Hb_000352_360 Hb_001856_260 Hb_001856_260 Hb_000327_100--Hb_001856_260 Hb_000477_020 Hb_000477_020 Hb_000327_100--Hb_000477_020 Hb_001675_020--Hb_000477_020 Hb_001675_020--Hb_007403_100 Hb_001675_020--Hb_002869_090 Hb_007237_060 Hb_007237_060 Hb_001675_020--Hb_007237_060 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_000419_140 Hb_000419_140 Hb_002616_020--Hb_000419_140 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274116 28.7285 48.9709 474.305 0.205656 0.234501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 96.1127 103.834

CAGE analysis