Hb_000659_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig659: 93798-95331
Sequence    

Annotation

kegg
ID rcu:RCOM_0407120
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002529537.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SU68
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_0407120 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000659_090 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_006237_030 0.0415855642 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_095937_010 0.0775328936 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_145620_010 0.0918445384 - - hypothetical protein VITISV_019786 [Vitis vinifera]
5 Hb_000421_280 0.1687178683 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_007975_020 0.1908920182 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000811_090 0.1988065511 - - hypothetical protein VITISV_043745 [Vitis vinifera]
8 Hb_025161_030 0.2368780747 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
9 Hb_000915_190 0.2389208038 - - -
10 Hb_001496_050 0.2402015553 - - yth domain-containing protein, putative [Ricinus communis]
11 Hb_000968_070 0.2502391951 - - -
12 Hb_001320_020 0.2604194556 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_007793_030 0.2618515511 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
14 Hb_062317_020 0.2677134175 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002255_080 0.2727662497 - - -
16 Hb_004274_010 0.2772948941 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
17 Hb_095399_010 0.2783259203 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
18 Hb_001452_150 0.2787489324 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
19 Hb_003427_040 0.280265504 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_009826_010 0.2807253516 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000659_090 Hb_000659_090 Hb_006237_030 Hb_006237_030 Hb_000659_090--Hb_006237_030 Hb_095937_010 Hb_095937_010 Hb_000659_090--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_000659_090--Hb_145620_010 Hb_000421_280 Hb_000421_280 Hb_000659_090--Hb_000421_280 Hb_007975_020 Hb_007975_020 Hb_000659_090--Hb_007975_020 Hb_000811_090 Hb_000811_090 Hb_000659_090--Hb_000811_090 Hb_006237_030--Hb_095937_010 Hb_006237_030--Hb_145620_010 Hb_006237_030--Hb_000421_280 Hb_006237_030--Hb_000811_090 Hb_006237_030--Hb_007975_020 Hb_095937_010--Hb_145620_010 Hb_095937_010--Hb_000421_280 Hb_095937_010--Hb_000811_090 Hb_025161_030 Hb_025161_030 Hb_095937_010--Hb_025161_030 Hb_145620_010--Hb_000421_280 Hb_145620_010--Hb_000811_090 Hb_145620_010--Hb_025161_030 Hb_000421_280--Hb_000811_090 Hb_003915_030 Hb_003915_030 Hb_000421_280--Hb_003915_030 Hb_002255_080 Hb_002255_080 Hb_007975_020--Hb_002255_080 Hb_007975_020--Hb_095937_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0345871 0 0.0335336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0280004 0.134816

CAGE analysis