Hb_000661_110

Information

Type -
Description -
Location Contig661: 82652-87132
Sequence    

Annotation

kegg
ID rcu:RCOM_1020440
description hypothetical protein
nr
ID XP_012092647.1
description PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
swissprot
ID Q8L730
description Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana GN=At1g04770 PE=2 SV=1
trembl
ID A0A067J997
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06408 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52960: 82722-87097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_110 0.0 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
2 Hb_000050_190 0.0981098275 - - conserved hypothetical protein [Ricinus communis]
3 Hb_132840_110 0.0987177136 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
4 Hb_002876_320 0.1008535592 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
5 Hb_001021_220 0.1011168437 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
6 Hb_001268_280 0.1018799504 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002081_010 0.1035813173 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001269_210 0.1043004602 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
9 Hb_000340_420 0.1048484156 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
10 Hb_002843_120 0.1049909657 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
11 Hb_000162_030 0.1052110147 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_000679_270 0.1057955293 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_001472_060 0.1061683364 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
14 Hb_000599_180 0.106552273 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000777_050 0.107801694 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
16 Hb_002267_140 0.1088780105 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_001047_220 0.1097120954 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
18 Hb_000037_190 0.1100621174 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
19 Hb_001635_040 0.1115837547 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
20 Hb_138596_010 0.1118690424 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_110 Hb_000661_110 Hb_000050_190 Hb_000050_190 Hb_000661_110--Hb_000050_190 Hb_132840_110 Hb_132840_110 Hb_000661_110--Hb_132840_110 Hb_002876_320 Hb_002876_320 Hb_000661_110--Hb_002876_320 Hb_001021_220 Hb_001021_220 Hb_000661_110--Hb_001021_220 Hb_001268_280 Hb_001268_280 Hb_000661_110--Hb_001268_280 Hb_002081_010 Hb_002081_010 Hb_000661_110--Hb_002081_010 Hb_004672_040 Hb_004672_040 Hb_000050_190--Hb_004672_040 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_003168_110 Hb_003168_110 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_000009_400 Hb_000009_400 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001021_220--Hb_001268_280 Hb_001021_220--Hb_132840_110 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_000010_390 Hb_000010_390 Hb_002081_010--Hb_000010_390 Hb_003884_030 Hb_003884_030 Hb_002081_010--Hb_003884_030 Hb_007904_030 Hb_007904_030 Hb_002081_010--Hb_007904_030 Hb_007062_020 Hb_007062_020 Hb_002081_010--Hb_007062_020 Hb_117552_010 Hb_117552_010 Hb_002081_010--Hb_117552_010 Hb_000803_260 Hb_000803_260 Hb_002081_010--Hb_000803_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.093 13.7735 15.5274 15.6026 12.7443 16.6212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4198 3.50962 15.1556 7.89699 13.3112

CAGE analysis