Hb_000661_140

Information

Type -
Description -
Location Contig661: 132138-137035
Sequence    

Annotation

kegg
ID rcu:RCOM_0854030
description hypothetical protein
nr
ID XP_012090056.1
description PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25962 PE=4 SV=1
Gene Ontology
ID GO:0048316
description titan9 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52970: 132251-133749 , PASA_asmbl_52971: 134083-137009 , PASA_asmbl_52972: 134083-135314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_140 0.0 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
2 Hb_002639_150 0.0519374371 - - -
3 Hb_000926_310 0.0633286625 - - uncharacterized protein LOC100500241 [Glycine max]
4 Hb_011013_010 0.0703024416 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_004785_190 0.0789610916 - - PHD finger family protein [Populus trichocarpa]
6 Hb_005288_150 0.0804487165 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_020367_050 0.0827130666 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
8 Hb_002192_080 0.0829561378 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
9 Hb_058972_010 0.083333483 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
10 Hb_000853_430 0.083578067 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_140833_010 0.0892945629 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
12 Hb_001195_040 0.0894919612 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
13 Hb_000610_010 0.0925676905 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
14 Hb_000976_260 0.0958447044 - - -
15 Hb_000261_250 0.0961939173 - - elongation factor 1-alpha [Lepidium sativum]
16 Hb_001195_260 0.0988260643 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
17 Hb_000260_100 0.0992368129 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003687_230 0.1001883275 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
19 Hb_005588_030 0.1009476607 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
20 Hb_001329_130 0.1010139483 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000661_140 Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_002296_050 Hb_002296_050 Hb_004785_190--Hb_002296_050 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_005288_150--Hb_020367_050 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_001329_130 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2465 7.05422 15.0484 5.02436 10.2204 11.6226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0429 10.3757 7.53285 3.28901 3.35422

CAGE analysis