Hb_000661_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig661: 156526-161212
Sequence    

Annotation

kegg
ID rcu:RCOM_1579060
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002513539.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9RIH0
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1579060 PE=4 SV=1
Gene Ontology
ID GO:0004721
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52979: 156286-156553 , PASA_asmbl_52980: 157169-157473 , PASA_asmbl_52981: 157715-158437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_170 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_000446_090 0.0715417524 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
3 Hb_004046_010 0.1010729278 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
4 Hb_009382_020 0.1069847451 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
5 Hb_000051_110 0.1093308492 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000134_350 0.1124816459 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
7 Hb_007943_080 0.1145968782 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
8 Hb_000221_270 0.114798501 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
9 Hb_003861_080 0.1163989319 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
10 Hb_002027_120 0.116499448 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
11 Hb_000110_160 0.1172662293 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000069_460 0.1179595557 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
13 Hb_001047_020 0.1184220132 - - -
14 Hb_008066_010 0.12243906 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
15 Hb_015306_020 0.1227769366 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
16 Hb_000190_140 0.1244150687 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
17 Hb_001329_300 0.1251809645 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
18 Hb_000300_620 0.1255038657 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
19 Hb_000479_330 0.1259118882 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
20 Hb_000635_220 0.1272276357 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_170 Hb_000661_170 Hb_000446_090 Hb_000446_090 Hb_000661_170--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_000661_170--Hb_004046_010 Hb_009382_020 Hb_009382_020 Hb_000661_170--Hb_009382_020 Hb_000051_110 Hb_000051_110 Hb_000661_170--Hb_000051_110 Hb_000134_350 Hb_000134_350 Hb_000661_170--Hb_000134_350 Hb_007943_080 Hb_007943_080 Hb_000661_170--Hb_007943_080 Hb_000446_090--Hb_004046_010 Hb_001047_020 Hb_001047_020 Hb_000446_090--Hb_001047_020 Hb_000190_140 Hb_000190_140 Hb_000446_090--Hb_000190_140 Hb_000110_160 Hb_000110_160 Hb_000446_090--Hb_000110_160 Hb_015306_020 Hb_015306_020 Hb_000446_090--Hb_015306_020 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_008066_010 Hb_008066_010 Hb_000051_110--Hb_008066_010 Hb_001604_010 Hb_001604_010 Hb_000051_110--Hb_001604_010 Hb_000221_270 Hb_000221_270 Hb_000051_110--Hb_000221_270 Hb_009111_050 Hb_009111_050 Hb_000051_110--Hb_009111_050 Hb_000069_460 Hb_000069_460 Hb_000051_110--Hb_000069_460 Hb_000051_110--Hb_000190_140 Hb_000134_350--Hb_000138_040 Hb_000134_350--Hb_007943_080 Hb_000358_080 Hb_000358_080 Hb_000134_350--Hb_000358_080 Hb_003861_080 Hb_003861_080 Hb_000134_350--Hb_003861_080 Hb_000134_350--Hb_009382_020 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95503 2.21916 0.260935 1.27683 3.47273 5.94324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55097 2.84401 8.26786 3.45992 1.47608

CAGE analysis