Hb_000661_190

Information

Type -
Description -
Location Contig661: 196090-198799
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012079508.1
description PREDICTED: protein spt2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_190 0.0 - - PREDICTED: protein spt2-like [Jatropha curcas]
2 Hb_000211_060 0.0565993599 - - glutathione peroxidase [Populus euphratica]
3 Hb_007768_030 0.05882341 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_009474_010 0.0683257505 - - -
5 Hb_000204_200 0.0930883765 - - hypothetical protein VITISV_019818 [Vitis vinifera]
6 Hb_030630_010 0.0977569248 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
7 Hb_021156_030 0.17405759 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
8 Hb_000370_010 0.201667052 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_003177_120 0.2294252601 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
10 Hb_000038_190 0.2832201284 - - -
11 Hb_000046_150 0.2832201284 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000047_120 0.2832201284 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_120 0.2832201284 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
14 Hb_000094_140 0.2832201284 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
15 Hb_000100_080 0.2832201284 - - -
16 Hb_000120_830 0.2832201284 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
17 Hb_000134_060 0.2832201284 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
18 Hb_000173_450 0.2832201284 - - -
19 Hb_000175_170 0.2832201284 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
20 Hb_000181_170 0.2832201284 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]

Gene co-expression network

sample Hb_000661_190 Hb_000661_190 Hb_000211_060 Hb_000211_060 Hb_000661_190--Hb_000211_060 Hb_007768_030 Hb_007768_030 Hb_000661_190--Hb_007768_030 Hb_009474_010 Hb_009474_010 Hb_000661_190--Hb_009474_010 Hb_000204_200 Hb_000204_200 Hb_000661_190--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_000661_190--Hb_030630_010 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030 Hb_000211_060--Hb_007768_030 Hb_000211_060--Hb_009474_010 Hb_000211_060--Hb_021156_030 Hb_000211_060--Hb_000204_200 Hb_000211_060--Hb_030630_010 Hb_007768_030--Hb_009474_010 Hb_007768_030--Hb_000204_200 Hb_007768_030--Hb_030630_010 Hb_000370_010 Hb_000370_010 Hb_007768_030--Hb_000370_010 Hb_009474_010--Hb_000204_200 Hb_009474_010--Hb_030630_010 Hb_009474_010--Hb_000370_010 Hb_000204_200--Hb_030630_010 Hb_000204_200--Hb_000370_010 Hb_030630_010--Hb_000370_010 Hb_000427_120 Hb_000427_120 Hb_021156_030--Hb_000427_120 Hb_006355_050 Hb_006355_050 Hb_021156_030--Hb_006355_050 Hb_021156_030--Hb_007768_030 Hb_000038_190 Hb_000038_190 Hb_021156_030--Hb_000038_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0315887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.176966 0 0

CAGE analysis