Hb_000661_240

Information

Type -
Description -
Location Contig661: 267674-269081
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05540g
description POPTRDRAFT_821459; hypothetical protein
nr
ID XP_002313350.1
description hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HNZ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05540g PE=4 SV=1
Gene Ontology
ID GO:0016023
description hypothetical protein POPTR_0009s05540g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52994: 267694-269056
cDNA
(Sanger)
(ID:Location)		 039_M05.ab1: 267862-269056 , 051_I12.ab1: 267862-269056

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_240 0.0 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
2 Hb_004005_010 0.1047795104 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
3 Hb_172221_010 0.1061006729 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
4 Hb_000329_020 0.1095232657 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
5 Hb_026398_010 0.1095311608 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
6 Hb_001571_090 0.1110718977 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
7 Hb_002835_320 0.1187857235 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_000042_260 0.118816604 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
9 Hb_002660_030 0.1195809526 - - conserved hypothetical protein [Ricinus communis]
10 Hb_019516_100 0.1199382208 - - 40S ribosomal protein S14, putative [Ricinus communis]
11 Hb_011311_010 0.122195317 - - 60S ribosomal protein L27C [Hevea brasiliensis]
12 Hb_002248_100 0.1225255041 - - hypothetical protein VITISV_027197 [Vitis vinifera]
13 Hb_001863_090 0.1229459917 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
14 Hb_012753_230 0.1235179397 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_009851_100 0.1252367007 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
16 Hb_003549_020 0.1256764266 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000272_050 0.1264462146 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
18 Hb_000526_150 0.1266435017 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
19 Hb_001552_080 0.1274086548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000212_470 0.1279325598 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]

Gene co-expression network

sample Hb_000661_240 Hb_000661_240 Hb_004005_010 Hb_004005_010 Hb_000661_240--Hb_004005_010 Hb_172221_010 Hb_172221_010 Hb_000661_240--Hb_172221_010 Hb_000329_020 Hb_000329_020 Hb_000661_240--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000661_240--Hb_026398_010 Hb_001571_090 Hb_001571_090 Hb_000661_240--Hb_001571_090 Hb_002835_320 Hb_002835_320 Hb_000661_240--Hb_002835_320 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020 Hb_172221_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_172221_010--Hb_000042_260 Hb_172221_010--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_000329_020--Hb_000042_260 Hb_000329_020--Hb_026398_010 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_000042_260 Hb_026398_010--Hb_002588_010 Hb_003226_220 Hb_003226_220 Hb_001571_090--Hb_003226_220 Hb_007290_080 Hb_007290_080 Hb_001571_090--Hb_007290_080 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8866 5.46779 8.26801 14.1933 30.5194 24.3103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.094 124.159 20.8317 26.1003 5.69612

CAGE analysis