Hb_000661_250

Information

Type -
Description -
Location Contig661: 269433-273257
Sequence    

Annotation

kegg
ID rcu:RCOM_1578700
description polyadenylate-binding protein, putative
nr
ID XP_012090039.1
description PREDICTED: RNA-binding protein 8A [Jatropha curcas]
swissprot
ID B5DGI7
description RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
trembl
ID A0A067JH32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25949 PE=4 SV=1
Gene Ontology
ID GO:0005730
description rna-binding protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52995: 269484-273151 , PASA_asmbl_52996: 269489-272844
cDNA
(Sanger)
(ID:Location)		 010_H20.ab1: 269545-270880 , 039_M05r.ab1: 267862-269055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_250 0.0 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
2 Hb_001259_090 0.0360344426 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
3 Hb_096563_010 0.050379252 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
4 Hb_000462_140 0.0596478006 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
5 Hb_001635_170 0.0636738666 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
6 Hb_002007_060 0.0644580171 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_002233_150 0.065287728 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
8 Hb_011360_140 0.06538647 - - 40S ribosomal protein S19, putative [Ricinus communis]
9 Hb_005993_040 0.0656289527 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
10 Hb_011689_080 0.0657944011 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
11 Hb_000866_270 0.066097522 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
12 Hb_000000_160 0.0665389682 - - PREDICTED: membrin-11 [Jatropha curcas]
13 Hb_001301_160 0.0666100776 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
14 Hb_086639_070 0.0687191784 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_001195_760 0.0690315172 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_003010_030 0.0694375388 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_000327_120 0.0702326275 - - FGFR1 oncogene partner, putative [Ricinus communis]
18 Hb_000059_330 0.0707636468 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
19 Hb_000300_060 0.0727355184 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
20 Hb_000656_400 0.0735158155 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_250 Hb_000661_250 Hb_001259_090 Hb_001259_090 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_001635_170--Hb_022250_030 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_002007_060--Hb_000866_270 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.6642 47.3031 40.108 34.25 84.8923 83.9894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.2842 103.697 54.7555 34.4427 24.8335

CAGE analysis