Hb_000665_010

Information

Type -
Description -
Location Contig665: 9974-10525
Sequence    

Annotation

kegg
ID rcu:RCOM_0922330
description hypothetical protein
nr
ID ADR71297.1
description hypothetical protein 20 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMR0
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53167: 9818-10897
cDNA
(Sanger)
(ID:Location)		 002_E01.ab1: 9816-10581 , 009_I24.ab1: 9818-10521 , 020_B11.ab1: 9818-10573 , 026_I23.ab1: 9818-10421 , 040_C04.ab1: 9817-10524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_010 0.0 - - hypothetical protein 20 [Hevea brasiliensis]
2 Hb_005551_060 0.1282753105 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
3 Hb_000525_010 0.1307874334 - - ring finger protein, putative [Ricinus communis]
4 Hb_001950_030 0.1402100618 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
5 Hb_096224_040 0.1402789243 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
6 Hb_000140_070 0.1428065516 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
7 Hb_000009_580 0.147407413 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
8 Hb_001220_030 0.1479231542 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
9 Hb_000025_330 0.1482335509 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
10 Hb_012573_080 0.1491390758 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
11 Hb_146464_010 0.1508142516 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_001691_150 0.1530112069 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
13 Hb_027506_020 0.1532263828 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
14 Hb_012807_050 0.1559820706 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_042038_020 0.1569947838 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
16 Hb_002904_030 0.1589897986 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
17 Hb_001247_120 0.1593408326 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
18 Hb_000987_140 0.1611465568 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
19 Hb_000418_070 0.1627227135 - - auxin:hydrogen symporter, putative [Ricinus communis]
20 Hb_003517_060 0.1636450378 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000665_010 Hb_000665_010 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000525_010 Hb_000525_010 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_096224_040 Hb_096224_040 Hb_000665_010--Hb_096224_040 Hb_000140_070 Hb_000140_070 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580 Hb_001247_120 Hb_001247_120 Hb_005551_060--Hb_001247_120 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_146464_010 Hb_146464_010 Hb_005551_060--Hb_146464_010 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000025_330 Hb_000025_330 Hb_000525_010--Hb_000025_330 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_001950_030--Hb_000525_010 Hb_004597_010 Hb_004597_010 Hb_001950_030--Hb_004597_010 Hb_155396_010 Hb_155396_010 Hb_001950_030--Hb_155396_010 Hb_001950_030--Hb_001247_120 Hb_000540_120 Hb_000540_120 Hb_001950_030--Hb_000540_120 Hb_005843_100 Hb_005843_100 Hb_096224_040--Hb_005843_100 Hb_096224_040--Hb_027506_020 Hb_005843_150 Hb_005843_150 Hb_096224_040--Hb_005843_150 Hb_001141_390 Hb_001141_390 Hb_096224_040--Hb_001141_390 Hb_002813_050 Hb_002813_050 Hb_096224_040--Hb_002813_050 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_076693_020 Hb_076693_020 Hb_000140_070--Hb_076693_020 Hb_000140_070--Hb_001220_030 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_003106_040 Hb_003106_040 Hb_000009_580--Hb_003106_040 Hb_003517_060 Hb_003517_060 Hb_000009_580--Hb_003517_060 Hb_000009_580--Hb_096224_040 Hb_001053_030 Hb_001053_030 Hb_000009_580--Hb_001053_030 Hb_000336_140 Hb_000336_140 Hb_000009_580--Hb_000336_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
344.714 720.354 34.6651 273.869 325.598 449.632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.457 262.88 386.402 103.571 30.2351

CAGE analysis