Hb_000665_030

Information

Type -
Description -
Location Contig665: 15387-18741
Sequence    

Annotation

kegg
ID rcu:RCOM_0922440
description hypothetical protein
nr
ID XP_012076467.1
description PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53169: 15617-15765 , PASA_asmbl_53171: 15802-18085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_030 0.0 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
2 Hb_010128_090 0.0856112215 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
3 Hb_005396_050 0.1189842765 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
4 Hb_017075_030 0.1267364587 - - helicase, putative [Ricinus communis]
5 Hb_015026_070 0.1305592735 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
6 Hb_001769_010 0.1387039165 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001157_180 0.139489504 - - protein binding protein, putative [Ricinus communis]
8 Hb_002745_010 0.1409687938 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
9 Hb_003878_140 0.1421529605 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
10 Hb_001623_140 0.14373739 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
11 Hb_033883_060 0.1441430425 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
12 Hb_045046_010 0.1441655763 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
13 Hb_031042_070 0.1451891759 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005946_170 0.1453715928 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_023827_040 0.1466236753 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
16 Hb_000865_080 0.1470871571 - - arsenite-resistance protein, putative [Ricinus communis]
17 Hb_001486_080 0.1477288452 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
18 Hb_001220_030 0.1477773366 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
19 Hb_004920_130 0.1478996769 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
20 Hb_001021_170 0.1482665146 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_030 Hb_000665_030 Hb_010128_090 Hb_010128_090 Hb_000665_030--Hb_010128_090 Hb_005396_050 Hb_005396_050 Hb_000665_030--Hb_005396_050 Hb_017075_030 Hb_017075_030 Hb_000665_030--Hb_017075_030 Hb_015026_070 Hb_015026_070 Hb_000665_030--Hb_015026_070 Hb_001769_010 Hb_001769_010 Hb_000665_030--Hb_001769_010 Hb_001157_180 Hb_001157_180 Hb_000665_030--Hb_001157_180 Hb_010128_090--Hb_001157_180 Hb_010128_090--Hb_017075_030 Hb_003878_140 Hb_003878_140 Hb_010128_090--Hb_003878_140 Hb_000310_080 Hb_000310_080 Hb_010128_090--Hb_000310_080 Hb_004920_130 Hb_004920_130 Hb_010128_090--Hb_004920_130 Hb_156850_030 Hb_156850_030 Hb_005396_050--Hb_156850_030 Hb_000237_080 Hb_000237_080 Hb_005396_050--Hb_000237_080 Hb_001220_030 Hb_001220_030 Hb_005396_050--Hb_001220_030 Hb_004785_060 Hb_004785_060 Hb_005396_050--Hb_004785_060 Hb_001318_030 Hb_001318_030 Hb_005396_050--Hb_001318_030 Hb_000976_150 Hb_000976_150 Hb_005396_050--Hb_000976_150 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_017075_030--Hb_003878_140 Hb_076693_020 Hb_076693_020 Hb_015026_070--Hb_076693_020 Hb_023827_040 Hb_023827_040 Hb_015026_070--Hb_023827_040 Hb_002745_010 Hb_002745_010 Hb_015026_070--Hb_002745_010 Hb_045793_010 Hb_045793_010 Hb_015026_070--Hb_045793_010 Hb_001059_100 Hb_001059_100 Hb_015026_070--Hb_001059_100 Hb_124677_060 Hb_124677_060 Hb_015026_070--Hb_124677_060 Hb_001769_010--Hb_010128_090 Hb_000865_080 Hb_000865_080 Hb_001769_010--Hb_000865_080 Hb_155702_010 Hb_155702_010 Hb_001769_010--Hb_155702_010 Hb_001769_010--Hb_023827_040 Hb_001769_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_001769_010--Hb_000224_060 Hb_001157_180--Hb_004920_130 Hb_001157_180--Hb_031042_070 Hb_000343_210 Hb_000343_210 Hb_001157_180--Hb_000343_210 Hb_001157_180--Hb_017075_030 Hb_000002_440 Hb_000002_440 Hb_001157_180--Hb_000002_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.158 33.8113 8.0008 3.00677 16.0283 24.2803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3264 8.85701 15.3374 10.7766 6.76146

CAGE analysis