Hb_000665_040

Information

Type -
Description -
Location Contig665: 19296-20477
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08640g
description POPTRDRAFT_555959; hypothetical protein
nr
ID XP_012076470.1
description PREDICTED: stress response protein NST1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KMM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07116 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_040 0.0 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
2 Hb_002411_200 0.0853541099 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002007_310 0.0862277373 - - cyclin family protein [Populus trichocarpa]
4 Hb_000091_090 0.0878377248 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_003151_050 0.0888972615 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
6 Hb_000567_260 0.0894522102 - - BnaA09g41440D [Brassica napus]
7 Hb_007508_070 0.0900507118 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_000152_140 0.0901298325 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_002681_020 0.0935466556 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_015001_020 0.0946479326 - - PREDICTED: la-related protein 6B [Jatropha curcas]
11 Hb_003086_020 0.0951352323 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
12 Hb_005062_070 0.0954211081 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
13 Hb_004046_010 0.0957130461 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
14 Hb_001671_080 0.101154252 - - amino acid binding protein, putative [Ricinus communis]
15 Hb_009382_020 0.1015585493 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_001981_090 0.1019221497 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
17 Hb_000589_270 0.102232403 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
18 Hb_001329_300 0.1030019069 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
19 Hb_021650_030 0.1044984814 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
20 Hb_008066_010 0.1048942626 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_000665_040 Hb_000665_040 Hb_002411_200 Hb_002411_200 Hb_000665_040--Hb_002411_200 Hb_002007_310 Hb_002007_310 Hb_000665_040--Hb_002007_310 Hb_000091_090 Hb_000091_090 Hb_000665_040--Hb_000091_090 Hb_003151_050 Hb_003151_050 Hb_000665_040--Hb_003151_050 Hb_000567_260 Hb_000567_260 Hb_000665_040--Hb_000567_260 Hb_007508_070 Hb_007508_070 Hb_000665_040--Hb_007508_070 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_002411_200--Hb_000091_090 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_003728_020 Hb_003728_020 Hb_002007_310--Hb_003728_020 Hb_002007_310--Hb_007508_070 Hb_001439_120 Hb_001439_120 Hb_002007_310--Hb_001439_120 Hb_000029_030 Hb_000029_030 Hb_002007_310--Hb_000029_030 Hb_033491_010 Hb_033491_010 Hb_002007_310--Hb_033491_010 Hb_000091_090--Hb_021650_030 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_015001_020 Hb_015001_020 Hb_007508_070--Hb_015001_020 Hb_004812_010 Hb_004812_010 Hb_007508_070--Hb_004812_010 Hb_001366_190 Hb_001366_190 Hb_007508_070--Hb_001366_190 Hb_001454_210 Hb_001454_210 Hb_007508_070--Hb_001454_210 Hb_007508_070--Hb_000567_260 Hb_028872_140 Hb_028872_140 Hb_007508_070--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.6422 31.5285 7.37364 13.4176 71.129 75.7906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.043 71.6542 102.023 36.3686 22.1073

CAGE analysis