Hb_000665_050

Information

Type -
Description -
Location Contig665: 21534-27002
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27590g
description POPTRDRAFT_865693; hypothetical protein
nr
ID XP_012076154.1
description PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
swissprot
ID Q84VX3
description Aberrant root formation protein 4 OS=Arabidopsis thaliana GN=ALF4 PE=1 SV=2
trembl
ID A0A067KHB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12787 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53175: 21591-26998
cDNA
(Sanger)
(ID:Location)		 047_N05.ab1: 24557-26998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_050 0.0 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
2 Hb_005306_180 0.074630711 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
3 Hb_001218_030 0.0814006765 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
4 Hb_000414_130 0.0816188816 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
5 Hb_001301_110 0.0843952906 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
6 Hb_000460_030 0.0876882762 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
7 Hb_000853_150 0.0887948043 - - Fumarase 1 isoform 2 [Theobroma cacao]
8 Hb_029584_050 0.0891865789 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
9 Hb_000665_140 0.0894104815 - - PREDICTED: protein MEMO1 [Jatropha curcas]
10 Hb_004734_040 0.0900540875 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
11 Hb_002014_020 0.0901111331 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_008173_110 0.0906800731 - - DNA binding protein, putative [Ricinus communis]
13 Hb_004157_050 0.0907799293 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
14 Hb_000483_260 0.0923271276 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
15 Hb_000210_120 0.0929498268 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
16 Hb_011344_190 0.0930740941 - - PREDICTED: maspardin [Jatropha curcas]
17 Hb_003058_120 0.0963664044 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
18 Hb_001653_020 0.09653634 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
19 Hb_005914_170 0.0969541384 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
20 Hb_001369_250 0.0972095237 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_050 Hb_000665_050 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001828_150 Hb_001828_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_001218_030--Hb_000483_260 Hb_001653_020 Hb_001653_020 Hb_000414_130--Hb_001653_020 Hb_000414_130--Hb_015778_010 Hb_000030_030 Hb_000030_030 Hb_000414_130--Hb_000030_030 Hb_003502_060 Hb_003502_060 Hb_000414_130--Hb_003502_060 Hb_000414_130--Hb_005306_180 Hb_000069_720 Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_007894_060 Hb_007894_060 Hb_001301_110--Hb_007894_060 Hb_006570_080 Hb_006570_080 Hb_000460_030--Hb_006570_080 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_000460_030--Hb_000483_260 Hb_000460_030--Hb_005588_060 Hb_008725_230 Hb_008725_230 Hb_000460_030--Hb_008725_230 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_000853_150--Hb_005588_060 Hb_000853_150--Hb_001828_150 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.3345 8.54254 11.3883 15.5875 5.22174 9.06937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7694 16.6188 15.5925 20.7668 8.19901

CAGE analysis