Hb_000665_060

Information

Type -
Description -
Location Contig665: 29901-38475
Sequence    

Annotation

kegg
ID rcu:RCOM_0922580
description hypothetical protein
nr
ID XP_012076471.1
description PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
swissprot
ID Q9FY61
description Trafficking protein particle complex II-specific subunit 120 homolog OS=Arabidopsis thaliana GN=TRS120 PE=1 SV=1
trembl
ID A0A067KBD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07117 PE=4 SV=1
Gene Ontology
ID GO:0000919
description trafficking protein particle complex subunit 9 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53177: 30243-30668 , PASA_asmbl_53178: 31009-34947 , PASA_asmbl_53179: 35751-37008 , PASA_asmbl_53180: 37399-38485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_060 0.0 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
2 Hb_000174_180 0.0649873106 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000156_010 0.0676161819 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
4 Hb_000254_090 0.0691167235 - - PREDICTED: la protein 2 [Jatropha curcas]
5 Hb_000192_080 0.0722840346 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
6 Hb_009218_010 0.0756926914 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
7 Hb_000009_560 0.0762552214 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
8 Hb_001538_130 0.0766109866 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000890_210 0.0772126254 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
10 Hb_000207_330 0.0774862108 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
11 Hb_000172_290 0.077628842 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
12 Hb_006634_070 0.0778859626 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
13 Hb_001500_140 0.078540465 - - pelota, putative [Ricinus communis]
14 Hb_002169_050 0.0794841658 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
15 Hb_002110_190 0.0797831381 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
16 Hb_001198_100 0.0800694408 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
17 Hb_010142_020 0.0804981452 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004567_090 0.0807884906 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
19 Hb_001571_050 0.08087254 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
20 Hb_054865_150 0.0812010756 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]

Gene co-expression network

sample Hb_000665_060 Hb_000665_060 Hb_000174_180 Hb_000174_180 Hb_000665_060--Hb_000174_180 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000192_080 Hb_000192_080 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560 Hb_000028_390 Hb_000028_390 Hb_000174_180--Hb_000028_390 Hb_001449_040 Hb_001449_040 Hb_000174_180--Hb_001449_040 Hb_000590_050 Hb_000590_050 Hb_000174_180--Hb_000590_050 Hb_000174_180--Hb_000192_080 Hb_019616_020 Hb_019616_020 Hb_000174_180--Hb_019616_020 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_172632_080 Hb_172632_080 Hb_009218_010--Hb_172632_080 Hb_001341_170 Hb_001341_170 Hb_009218_010--Hb_001341_170 Hb_004143_060 Hb_004143_060 Hb_009218_010--Hb_004143_060 Hb_110291_010 Hb_110291_010 Hb_009218_010--Hb_110291_010 Hb_044728_010 Hb_044728_010 Hb_009218_010--Hb_044728_010 Hb_001199_100 Hb_001199_100 Hb_009218_010--Hb_001199_100 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39436 5.03461 3.08902 8.2903 5.06393 7.92046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6846 6.14701 7.86646 8.13955 6.84887

CAGE analysis