Hb_000665_070

Information

Type transcription factor
Description TF Family: HB
Location Contig665: 58787-63525
Sequence    

Annotation

kegg
ID cit:102614949
description homeobox protein knotted-1-like 3-like
nr
ID XP_012076472.1
description PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
swissprot
ID P48000
description Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1
trembl
ID A0A067KBM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07118 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53181: 58780-58884 , PASA_asmbl_53182: 58985-63960 , PASA_asmbl_53183: 58985-64016 , PASA_asmbl_53185: 60130-60551 , PASA_asmbl_53186: 62346-63952
cDNA
(Sanger)
(ID:Location)		 001_D19.ab1: 58985-59753 , 032_C22.ab1: 58985-59657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_070 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
2 Hb_004837_020 0.0937508591 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
3 Hb_004162_220 0.1052597359 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
4 Hb_000260_160 0.1075206033 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
5 Hb_013968_010 0.1085667322 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
6 Hb_004629_030 0.1137570739 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001484_090 0.1142281152 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
8 Hb_000453_230 0.1156093563 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_004577_010 0.1164670008 - - PREDICTED: transmembrane protein 45A [Prunus mume]
10 Hb_011188_010 0.1171185034 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
11 Hb_006816_010 0.1176220399 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002447_050 0.1197389173 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000665_150 0.1211464179 - - heparanase, putative [Ricinus communis]
14 Hb_000482_050 0.121270968 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
15 Hb_000487_370 0.1232755998 - - -
16 Hb_004346_040 0.1238743502 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
17 Hb_002249_030 0.1243254517 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
18 Hb_000300_560 0.1254422533 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
19 Hb_007576_180 0.1283474157 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
20 Hb_000477_070 0.1293415586 - - histone h2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000665_070 Hb_000665_070 Hb_004837_020 Hb_004837_020 Hb_000665_070--Hb_004837_020 Hb_004162_220 Hb_004162_220 Hb_000665_070--Hb_004162_220 Hb_000260_160 Hb_000260_160 Hb_000665_070--Hb_000260_160 Hb_013968_010 Hb_013968_010 Hb_000665_070--Hb_013968_010 Hb_004629_030 Hb_004629_030 Hb_000665_070--Hb_004629_030 Hb_001484_090 Hb_001484_090 Hb_000665_070--Hb_001484_090 Hb_000453_230 Hb_000453_230 Hb_004837_020--Hb_000453_230 Hb_000771_170 Hb_000771_170 Hb_004837_020--Hb_000771_170 Hb_000665_150 Hb_000665_150 Hb_004837_020--Hb_000665_150 Hb_007576_180 Hb_007576_180 Hb_004837_020--Hb_007576_180 Hb_002447_050 Hb_002447_050 Hb_004837_020--Hb_002447_050 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_008120_040 Hb_008120_040 Hb_000260_160--Hb_008120_040 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_000260_160--Hb_004577_010 Hb_000260_160--Hb_013968_010 Hb_004117_270 Hb_004117_270 Hb_000260_160--Hb_004117_270 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_000482_050 Hb_000482_050 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_029695_120 Hb_029695_120 Hb_001484_090--Hb_029695_120 Hb_002809_160 Hb_002809_160 Hb_001484_090--Hb_002809_160 Hb_001702_050 Hb_001702_050 Hb_001484_090--Hb_001702_050 Hb_009078_020 Hb_009078_020 Hb_001484_090--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_001484_090--Hb_001059_060 Hb_001484_090--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7274 28.4571 38.6397 16.9984 5.53923 8.87136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78164 7.04506 2.55063 21.8283 46.2559

CAGE analysis