Hb_000665_110

Information

Type -
Description -
Location Contig665: 100602-104426
Sequence    

Annotation

kegg
ID tcc:TCM_038251
description Ribosomal protein S11-beta
nr
ID XP_007013672.1
description Ribosomal protein S11-beta [Theobroma cacao]
swissprot
ID Q9M5M1
description 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1
trembl
ID A0A061GP47
description Ribosomal protein S11-beta OS=Theobroma cacao GN=TCM_038251 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53193: 97571-103960 , PASA_asmbl_53194: 97591-103960
cDNA
(Sanger)
(ID:Location)		 002_B11.ab1: 97583-103871 , 003_H06.ab1: 97581-103890 , 006_E08.ab1: 97583-103834 , 021_A16.ab1: 97581-103799 , 025_N08.ab1: 97581-103784 , 027_D24.ab1: 97581-103784 , 027_N07.ab1: 97581-103844 , 028_I19.ab1: 97583-103779 , 034_J20.ab1: 97581-103825 , 034_K03.ab1: 97583-103842 , 048_N24.ab1: 97581-103786 , 053_O23.ab1: 97581-103861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_110 0.0 - - Ribosomal protein S11-beta [Theobroma cacao]
2 Hb_000562_060 0.1915775345 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
3 Hb_002025_210 0.2007878193 - - -
4 Hb_000181_380 0.2105122858 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
5 Hb_001233_020 0.2184417267 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
6 Hb_001220_010 0.2240368646 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
7 Hb_005489_010 0.232575525 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
8 Hb_033376_010 0.232652175 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
9 Hb_005245_070 0.2334196459 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
10 Hb_182005_010 0.2347591997 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
11 Hb_002740_010 0.237580852 - - stress-induced hydrophobic peptide [Cleistogenes songorica]
12 Hb_001017_060 0.2467644371 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_001488_400 0.2470874579 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
14 Hb_002344_120 0.2533248307 - - -
15 Hb_182964_010 0.2552395048 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
16 Hb_021924_010 0.2559317227 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
17 Hb_132180_010 0.2584981985 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
18 Hb_000975_180 0.2590410785 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
19 Hb_007894_230 0.2596664827 - - 30S ribosomal protein S14, putative [Ricinus communis]
20 Hb_001517_040 0.2599649925 - - -

Gene co-expression network

sample Hb_000665_110 Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_000665_110--Hb_000562_060 Hb_002025_210 Hb_002025_210 Hb_000665_110--Hb_002025_210 Hb_000181_380 Hb_000181_380 Hb_000665_110--Hb_000181_380 Hb_001233_020 Hb_001233_020 Hb_000665_110--Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_000665_110--Hb_001220_010 Hb_005489_010 Hb_005489_010 Hb_000665_110--Hb_005489_010 Hb_132180_010 Hb_132180_010 Hb_000562_060--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000562_060--Hb_000671_120 Hb_025288_010 Hb_025288_010 Hb_000562_060--Hb_025288_010 Hb_000562_060--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000562_060--Hb_011037_020 Hb_000562_060--Hb_001220_010 Hb_002025_210--Hb_005489_010 Hb_002344_120 Hb_002344_120 Hb_002025_210--Hb_002344_120 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_150766_020 Hb_150766_020 Hb_002025_210--Hb_150766_020 Hb_014834_030 Hb_014834_030 Hb_000181_380--Hb_014834_030 Hb_001935_150 Hb_001935_150 Hb_000181_380--Hb_001935_150 Hb_000975_180 Hb_000975_180 Hb_000181_380--Hb_000975_180 Hb_021924_010 Hb_021924_010 Hb_000181_380--Hb_021924_010 Hb_000463_130 Hb_000463_130 Hb_000181_380--Hb_000463_130 Hb_006541_020 Hb_006541_020 Hb_000181_380--Hb_006541_020 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_001233_020--Hb_000994_110 Hb_001220_010--Hb_080601_020 Hb_001220_010--Hb_132180_010 Hb_001220_010--Hb_000671_120 Hb_001220_010--Hb_004669_030 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230 Hb_005489_010--Hb_002344_120 Hb_005489_010--Hb_000562_060 Hb_005489_010--Hb_150766_020 Hb_005489_010--Hb_001233_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164396 0.373536 0.120726 11.3268 0.454505 4.41971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05854 13.1948 0.611777 0.82663 0.226209

CAGE analysis