Hb_000665_140

Information

Type -
Description -
Location Contig665: 156827-160744
Sequence    

Annotation

kegg
ID rcu:RCOM_0922780
description Protein C2orf4, putative
nr
ID XP_012076496.1
description PREDICTED: protein MEMO1 [Jatropha curcas]
swissprot
ID Q6DJ03
description Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1
trembl
ID A0A067KP21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07130 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53206: 156890-160719 , PASA_asmbl_53207: 156890-159013 , PASA_asmbl_53208: 156781-157034
cDNA
(Sanger)
(ID:Location)		 005_K18.ab1: 156890-158993 , 026_A21.ab1: 156894-159065 , 035_A16.ab1: 156890-159013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_140 0.0 - - PREDICTED: protein MEMO1 [Jatropha curcas]
2 Hb_004157_050 0.0621669459 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
3 Hb_001301_110 0.0707755399 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
4 Hb_003058_120 0.0762578874 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
5 Hb_001218_030 0.0764254549 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
6 Hb_000853_150 0.0771067786 - - Fumarase 1 isoform 2 [Theobroma cacao]
7 Hb_000167_010 0.078017992 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003531_070 0.080044237 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
9 Hb_000069_720 0.0825272909 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
10 Hb_000920_200 0.08435874 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
11 Hb_001123_040 0.0852983742 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
12 Hb_002119_130 0.0870432832 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
13 Hb_001828_150 0.0873180161 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
14 Hb_000665_050 0.0894104815 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
15 Hb_003678_020 0.0894432744 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000029_140 0.0937296686 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
17 Hb_008103_050 0.0942065073 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
18 Hb_006538_090 0.0952408015 - - PREDICTED: IST1 homolog [Jatropha curcas]
19 Hb_000483_300 0.0958188566 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
20 Hb_005276_040 0.0969183603 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000665_140 Hb_000665_140 Hb_004157_050 Hb_004157_050 Hb_000665_140--Hb_004157_050 Hb_001301_110 Hb_001301_110 Hb_000665_140--Hb_001301_110 Hb_003058_120 Hb_003058_120 Hb_000665_140--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000665_140--Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_000665_140--Hb_000853_150 Hb_000167_010 Hb_000167_010 Hb_000665_140--Hb_000167_010 Hb_004157_050--Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_004157_050--Hb_000069_720 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_001301_110--Hb_000069_720 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_001301_110--Hb_000167_010 Hb_007894_060 Hb_007894_060 Hb_001301_110--Hb_007894_060 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001828_150 Hb_001828_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_000853_150--Hb_005588_060 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_000167_010--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7603 15.8606 33.3326 33.0529 12.4229 16.3821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.4462 34.4401 30.4379 42.7432 32.9985

CAGE analysis