Hb_000665_160

Information

Type -
Description -
Location Contig665: 167803-173854
Sequence    

Annotation

kegg
ID rcu:RCOM_0923140
description cysteinyl-tRNA synthetase, putative (EC:6.1.1.16)
nr
ID XP_012076501.1
description PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
swissprot
ID B3E1P0
description Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1
trembl
ID A0A067KP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07135 PE=3 SV=1
Gene Ontology
ID GO:0005739
description cysteine--trna cytoplasmic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53209: 169585-171666 , PASA_asmbl_53210: 170458-170774 , PASA_asmbl_53211: 171675-173801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_160 0.0 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
2 Hb_000076_130 0.054925188 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
3 Hb_000544_010 0.0603733901 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
4 Hb_002909_050 0.0772309952 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000107_400 0.0774380868 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
6 Hb_007007_060 0.0811251374 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
7 Hb_002893_070 0.0848323344 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
8 Hb_000080_120 0.0849408017 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
9 Hb_008695_020 0.0880901548 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
10 Hb_000160_210 0.089894237 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006915_070 0.0899562861 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
12 Hb_004032_410 0.0906468704 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
13 Hb_003794_010 0.0909293034 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
14 Hb_030312_080 0.0919494588 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
15 Hb_000723_100 0.0920130915 - - phosphoglycerate kinase, putative [Ricinus communis]
16 Hb_004100_080 0.0925107412 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002749_110 0.0932652564 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
18 Hb_003018_130 0.0938557483 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
19 Hb_000236_240 0.0947641401 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
20 Hb_000003_290 0.0947924219 - - hypothetical protein JCGZ_24486 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_160 Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000665_160--Hb_000076_130 Hb_000544_010 Hb_000544_010 Hb_000665_160--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000665_160--Hb_002909_050 Hb_000107_400 Hb_000107_400 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_002893_070 Hb_002893_070 Hb_000665_160--Hb_002893_070 Hb_000076_130--Hb_000544_010 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110 Hb_010710_080 Hb_010710_080 Hb_002909_050--Hb_010710_080 Hb_002909_050--Hb_000544_010 Hb_001599_030 Hb_001599_030 Hb_002909_050--Hb_001599_030 Hb_006915_070 Hb_006915_070 Hb_002909_050--Hb_006915_070 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_003440_060 Hb_003440_060 Hb_002893_070--Hb_003440_060 Hb_000080_120 Hb_000080_120 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_000723_100 Hb_000723_100 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2411 5.84002 8.43007 4.88463 14.4446 10.6871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9061 6.19701 6.13798 5.81224 11.6102

CAGE analysis