Hb_000665_230

Information

Type -
Description -
Location Contig665: 220008-228940
Sequence    

Annotation

kegg
ID vvi:100259525
description uncharacterized LOC100259525
nr
ID XP_012076521.1
description PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
swissprot
ID Q84WU2
description Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1
trembl
ID A0A067KBP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07143 PE=4 SV=1
Gene Ontology
ID GO:0003824
description traf-like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53222: 219826-223298 , PASA_asmbl_53223: 224258-228936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_230 0.0 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
2 Hb_011689_030 0.0434022114 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
3 Hb_003805_040 0.051851789 - - Sacsin [Glycine soja]
4 Hb_009486_170 0.0524472762 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
5 Hb_000176_100 0.058653647 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
6 Hb_001133_030 0.0606210826 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
7 Hb_002007_110 0.0607870568 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
8 Hb_001951_170 0.0620015735 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_005357_260 0.0632595506 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
10 Hb_000958_050 0.0645787432 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
11 Hb_000703_130 0.0658769694 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
12 Hb_003581_170 0.0660062178 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
13 Hb_001628_070 0.0660340619 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_002333_050 0.0667574757 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
15 Hb_000003_100 0.0669452788 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
16 Hb_003216_090 0.0670549006 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
17 Hb_019430_020 0.0679730588 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_008053_040 0.0682421893 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
19 Hb_000265_090 0.0685402992 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
20 Hb_000069_470 0.0696385381 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_230 Hb_000665_230 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_000665_230--Hb_009486_170 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_005357_260 Hb_005357_260 Hb_011689_030--Hb_005357_260 Hb_011689_030--Hb_000176_100 Hb_011689_030--Hb_001133_030 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050 Hb_003805_040--Hb_009486_170 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_002521_020 Hb_002521_020 Hb_003805_040--Hb_002521_020 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_000176_100--Hb_005357_260 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_001133_030--Hb_002521_020 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.60812 21.0293 8.6116 10.4768 11.5419 11.5025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8161 4.58337 9.1253 12.8414 16.492

CAGE analysis