Hb_000665_240

Information

Type -
Description -
Location Contig665: 235630-238362
Sequence    

Annotation

kegg
ID rcu:RCOM_0923570
description Vesicle-associated membrane protein, putative
nr
ID XP_002515492.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9SIQ9
description Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=3 SV=1
trembl
ID B9RP23
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_0923570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 711

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53224: 236931-237226 , PASA_asmbl_53225: 237672-238197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_240 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_000928_240 0.0773528194 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
3 Hb_000392_440 0.0784741166 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
4 Hb_004440_090 0.0824334697 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
5 Hb_011360_140 0.0874005191 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_007426_230 0.0874495361 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
7 Hb_148912_010 0.0878134433 - - conserved hypothetical protein [Ricinus communis]
8 Hb_125000_010 0.0881502655 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_000172_370 0.0893797596 - - -
10 Hb_002603_100 0.0905338117 - - ATATH9, putative [Ricinus communis]
11 Hb_000221_220 0.0916505126 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
12 Hb_000270_840 0.0919301903 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
13 Hb_003540_040 0.0928116242 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
14 Hb_000046_280 0.0944876268 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
15 Hb_002411_170 0.0953934884 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
16 Hb_000905_190 0.0956371021 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
17 Hb_000019_230 0.0968787884 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
18 Hb_000015_080 0.0968957357 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
19 Hb_000297_050 0.0979129495 - - hypothetical protein JCGZ_08840 [Jatropha curcas]
20 Hb_002997_170 0.0982251817 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]

Gene co-expression network

sample Hb_000665_240 Hb_000665_240 Hb_000928_240 Hb_000928_240 Hb_000665_240--Hb_000928_240 Hb_000392_440 Hb_000392_440 Hb_000665_240--Hb_000392_440 Hb_004440_090 Hb_004440_090 Hb_000665_240--Hb_004440_090 Hb_011360_140 Hb_011360_140 Hb_000665_240--Hb_011360_140 Hb_007426_230 Hb_007426_230 Hb_000665_240--Hb_007426_230 Hb_148912_010 Hb_148912_010 Hb_000665_240--Hb_148912_010 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_001824_070 Hb_001824_070 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_000392_440--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_000392_440--Hb_005993_040 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_002928_130 Hb_002928_130 Hb_000392_440--Hb_002928_130 Hb_000015_080 Hb_000015_080 Hb_000392_440--Hb_000015_080 Hb_011571_020 Hb_011571_020 Hb_000392_440--Hb_011571_020 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_004440_090--Hb_007426_230 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_011360_140--Hb_005993_040 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_007426_230--Hb_002097_110 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_007426_230--Hb_000398_180 Hb_003038_030 Hb_003038_030 Hb_148912_010--Hb_003038_030 Hb_000172_370 Hb_000172_370 Hb_148912_010--Hb_000172_370 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_148912_010--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85236 2.59157 5.70934 2.24348 12.7661 14.2941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1224 13.253 9.90711 4.32673 2.02418

CAGE analysis