Hb_000665_270

Information

Type -
Description -
Location Contig665: 251536-255588
Sequence    

Annotation

kegg
ID mdm:103441475
description adenine phosphoribosyltransferase 2-like
nr
ID XP_012076532.1
description PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
swissprot
ID Q9LFP0
description Adenine phosphoribosyltransferase 5 OS=Arabidopsis thaliana GN=APT5 PE=1 SV=1
trembl
ID B9IKY6
description Adenine phosphoribosyltransferase 2 family protein OS=Populus trichocarpa GN=POPTR_0018s01860g PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenine phosphoribosyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53230: 251580-252961 , PASA_asmbl_53231: 252993-255564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_270 0.0 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
2 Hb_000465_440 0.0755505104 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
3 Hb_001649_030 0.0780677465 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
4 Hb_000336_200 0.0782761566 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_001269_500 0.0884565176 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
6 Hb_000358_040 0.0985090808 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
7 Hb_009288_040 0.1015726092 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_002928_030 0.1021265689 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_003752_090 0.1062459106 - - chitinase, putative [Ricinus communis]
10 Hb_002005_040 0.1113819143 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_006198_130 0.11199788 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
12 Hb_000260_710 0.1146202323 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
13 Hb_003376_390 0.1152904312 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
14 Hb_005063_080 0.1184945585 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_010620_050 0.1195813962 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
16 Hb_005116_100 0.1219201937 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
17 Hb_012799_190 0.1221429671 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
18 Hb_073973_120 0.1231457674 - - zinc finger protein, putative [Ricinus communis]
19 Hb_004871_010 0.1272884191 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
20 Hb_005618_150 0.128138821 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000665_270 Hb_000665_270 Hb_000465_440 Hb_000465_440 Hb_000665_270--Hb_000465_440 Hb_001649_030 Hb_001649_030 Hb_000665_270--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_000665_270--Hb_000336_200 Hb_001269_500 Hb_001269_500 Hb_000665_270--Hb_001269_500 Hb_000358_040 Hb_000358_040 Hb_000665_270--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000665_270--Hb_009288_040 Hb_000465_440--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_000465_440--Hb_003752_090 Hb_000465_440--Hb_000336_200 Hb_001793_020 Hb_001793_020 Hb_000465_440--Hb_001793_020 Hb_000465_440--Hb_001649_030 Hb_001649_030--Hb_001269_500 Hb_002928_030 Hb_002928_030 Hb_001649_030--Hb_002928_030 Hb_001649_030--Hb_003752_090 Hb_001649_030--Hb_000358_040 Hb_003376_390 Hb_003376_390 Hb_001649_030--Hb_003376_390 Hb_000336_200--Hb_001269_500 Hb_000336_200--Hb_001649_030 Hb_000336_200--Hb_000358_040 Hb_000336_200--Hb_009288_040 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_000358_040--Hb_002928_030 Hb_004629_030 Hb_004629_030 Hb_000358_040--Hb_004629_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_000358_040--Hb_003376_390 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75797 3.53288 9.49297 6.52596 2.40326 2.66202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58478 2.29179 0.443831 1.60101 13.4005

CAGE analysis