Hb_000666_100

Information

Type -
Description -
Location Contig666: 122693-125027
Sequence    

Annotation

kegg
ID tcc:TCM_005960
description Actin-related protein 2/3 complex subunit 2 isoform 2
nr
ID XP_007040958.1
description Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
swissprot
ID Q8LGI3
description Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1
trembl
ID A0A061DVH5
description Actin-related protein 2/3 complex subunit 2 isoform 2 OS=Theobroma cacao GN=TCM_005960 PE=4 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex 34kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53249: 122674-122869 , PASA_asmbl_53250: 122914-138970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000666_100 0.0 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
2 Hb_004545_110 0.049430076 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
3 Hb_003057_060 0.0582576084 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013575_010 0.0612319768 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
5 Hb_008616_050 0.0703319212 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
6 Hb_000200_020 0.0756687571 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
7 Hb_002641_060 0.0761964919 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_000347_240 0.0773696255 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
9 Hb_004627_040 0.0787223526 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
10 Hb_002681_100 0.0789410108 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
11 Hb_000080_130 0.0789678644 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
12 Hb_000260_350 0.0804662637 - - conserved hypothetical protein [Ricinus communis]
13 Hb_052805_010 0.0812010979 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_004990_010 0.081450231 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
15 Hb_003994_230 0.0823376424 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
16 Hb_000948_230 0.0824734624 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001427_160 0.0824902018 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_000127_140 0.0827397307 - - transporter-related family protein [Populus trichocarpa]
19 Hb_001195_060 0.0831865834 - - Protein yrdA, putative [Ricinus communis]
20 Hb_000345_310 0.0841376189 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000666_100 Hb_000666_100 Hb_004545_110 Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_003057_060 Hb_003057_060 Hb_000666_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_000666_100--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_002641_060 Hb_002641_060 Hb_000666_100--Hb_002641_060 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_004545_110--Hb_008616_050 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_003057_060--Hb_013575_010 Hb_002681_100 Hb_002681_100 Hb_003057_060--Hb_002681_100 Hb_000948_230 Hb_000948_230 Hb_003057_060--Hb_000948_230 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_004627_040 Hb_004627_040 Hb_003057_060--Hb_004627_040 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_013575_010--Hb_002681_100 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_008616_050--Hb_002641_060 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_002641_060--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47223 4.33602 9.3385 12.3537 6.12912 6.09316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61178 9.09453 8.00273 7.06749 6.76059

CAGE analysis