Hb_000666_110

Information

Type -
Description -
Location Contig666: 161239-166750
Sequence    

Annotation

kegg
ID rcu:RCOM_0096320
description Transcription initiation factor TFIID subunit, putative
nr
ID XP_012077715.1
description PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
swissprot
ID Q9M565
description Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana GN=TAF11 PE=1 SV=1
trembl
ID A0A067KAP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13073 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53251: 161324-166599 , PASA_asmbl_53252: 166387-166500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000666_110 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
2 Hb_001504_150 0.0590290457 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
3 Hb_019962_030 0.061909695 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
4 Hb_000141_060 0.063884382 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
5 Hb_000538_020 0.0711121096 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
6 Hb_000905_190 0.072439835 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
7 Hb_005503_030 0.0724515209 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
8 Hb_001439_150 0.0764468928 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
9 Hb_000107_390 0.0798555335 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
10 Hb_004722_060 0.0810588595 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
11 Hb_143629_010 0.0827001142 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000046_300 0.0831311301 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_011794_090 0.0833718936 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
14 Hb_000085_240 0.0840931319 - - fimbrin, putative [Ricinus communis]
15 Hb_008887_050 0.0847812458 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
16 Hb_002784_050 0.0850902938 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
17 Hb_005527_050 0.089841317 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_000205_120 0.0903173472 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
19 Hb_000676_050 0.0909248174 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
20 Hb_001511_020 0.0928214165 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000666_110 Hb_000666_110 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_019962_030 Hb_019962_030 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_001504_150--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001504_150--Hb_007164_020 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_011794_090 Hb_011794_090 Hb_000141_060--Hb_011794_090 Hb_143766_090 Hb_143766_090 Hb_000141_060--Hb_143766_090 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000270_840 Hb_000270_840 Hb_000538_020--Hb_000270_840 Hb_000538_020--Hb_004722_060 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.5342 20.5696 33.3278 13.9305 68.9806 57.4422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4546 46.9589 38.6831 15.0441 6.49203

CAGE analysis