Hb_000667_030

Information

Type -
Description -
Location Contig667: 32804-53322
Sequence    

Annotation

kegg
ID rcu:RCOM_1648230
description protein transport protein sec23, putative
nr
ID XP_012078435.1
description PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
swissprot
ID Q4PE39
description Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1
trembl
ID A0A067KL87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13124 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53275: 32758-52914 , PASA_asmbl_53277: 35438-35752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000667_030 0.0 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
2 Hb_010294_010 0.0634225612 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
3 Hb_005215_010 0.0652132959 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
4 Hb_012518_070 0.0665322061 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
5 Hb_021297_050 0.0675399276 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
6 Hb_000494_050 0.0699653099 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_000317_100 0.073764613 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
8 Hb_000960_040 0.0742433137 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
9 Hb_004182_050 0.0761885245 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
10 Hb_000313_120 0.0764275082 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_000230_260 0.0776032172 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
12 Hb_002890_130 0.0788576851 - - tip120, putative [Ricinus communis]
13 Hb_001814_030 0.078899313 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
14 Hb_011819_020 0.0798180497 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
15 Hb_000213_010 0.0813102687 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
16 Hb_000441_090 0.0819940057 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
17 Hb_004586_220 0.0821360835 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
18 Hb_000123_180 0.0829627437 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
19 Hb_000453_250 0.083430019 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
20 Hb_000264_350 0.0834896715 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]

Gene co-expression network

sample Hb_000667_030 Hb_000667_030 Hb_010294_010 Hb_010294_010 Hb_000667_030--Hb_010294_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_021297_050 Hb_021297_050 Hb_000667_030--Hb_021297_050 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_002301_300 Hb_002301_300 Hb_010294_010--Hb_002301_300 Hb_002026_150 Hb_002026_150 Hb_010294_010--Hb_002026_150 Hb_011228_010 Hb_011228_010 Hb_010294_010--Hb_011228_010 Hb_000960_040 Hb_000960_040 Hb_010294_010--Hb_000960_040 Hb_012330_010 Hb_012330_010 Hb_010294_010--Hb_012330_010 Hb_005215_010--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_005215_010--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_005215_010--Hb_011819_020 Hb_005215_010--Hb_000494_050 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012055_040 Hb_012055_040 Hb_012518_070--Hb_012055_040 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_012518_070--Hb_005215_010 Hb_012518_070--Hb_000494_050 Hb_000116_500 Hb_000116_500 Hb_021297_050--Hb_000116_500 Hb_001195_320 Hb_001195_320 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000213_010 Hb_000213_010 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_000494_050--Hb_012055_040 Hb_000494_050--Hb_011819_020 Hb_000494_050--Hb_000317_100 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1604 27.2108 19.2216 34.6863 34.6197 25.2716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0707 14.2177 23.8224 29.0069 30.1147

CAGE analysis