Hb_000668_010

Information

Type -
Description -
Location Contig668: 2399-5638
Sequence    

Annotation

kegg
ID tcc:TCM_034945
description Glycosyl hydrolase family protein isoform 1
nr
ID XP_012092754.1
description PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
swissprot
ID Q9SGZ5
description Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2
trembl
ID A0A067J908
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09858 PE=4 SV=1
Gene Ontology
ID GO:0008422
description probable beta-d-xylosidase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53295: 3356-5321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_010 0.0 - - PREDICTED: probable beta-D-xylosidase 7 [Jatropha curcas]
2 Hb_019936_010 0.1456769773 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
3 Hb_017417_010 0.1606158635 - - -
4 Hb_000188_190 0.165282747 - - -
5 Hb_003788_040 0.1804761245 - - -
6 Hb_000544_040 0.1838160479 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
7 Hb_004032_460 0.1843203006 - - -
8 Hb_000525_040 0.1880331228 - - -
9 Hb_005714_040 0.1884444604 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000692_170 0.1899732497 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
11 Hb_002192_070 0.1911776454 - - -
12 Hb_000922_150 0.1923635648 - - -
13 Hb_000849_150 0.1974565675 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
14 Hb_001454_390 0.2009950056 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
15 Hb_000088_180 0.2010181878 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
16 Hb_000641_030 0.2021466588 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_011616_030 0.2030338944 - - -
18 Hb_002388_060 0.2038393515 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000590_090 0.2039968635 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_010368_070 0.205806745 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000668_010 Hb_000668_010 Hb_019936_010 Hb_019936_010 Hb_000668_010--Hb_019936_010 Hb_017417_010 Hb_017417_010 Hb_000668_010--Hb_017417_010 Hb_000188_190 Hb_000188_190 Hb_000668_010--Hb_000188_190 Hb_003788_040 Hb_003788_040 Hb_000668_010--Hb_003788_040 Hb_000544_040 Hb_000544_040 Hb_000668_010--Hb_000544_040 Hb_004032_460 Hb_004032_460 Hb_000668_010--Hb_004032_460 Hb_011616_030 Hb_011616_030 Hb_019936_010--Hb_011616_030 Hb_032264_130 Hb_032264_130 Hb_019936_010--Hb_032264_130 Hb_000525_040 Hb_000525_040 Hb_019936_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_019936_010--Hb_010368_070 Hb_001454_390 Hb_001454_390 Hb_019936_010--Hb_001454_390 Hb_000922_150 Hb_000922_150 Hb_017417_010--Hb_000922_150 Hb_004048_140 Hb_004048_140 Hb_017417_010--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_017417_010--Hb_000183_070 Hb_017417_010--Hb_019936_010 Hb_005714_040 Hb_005714_040 Hb_017417_010--Hb_005714_040 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_005015_010 Hb_005015_010 Hb_000188_190--Hb_005015_010 Hb_004374_010 Hb_004374_010 Hb_000188_190--Hb_004374_010 Hb_000188_190--Hb_005714_040 Hb_000188_190--Hb_004032_460 Hb_002728_020 Hb_002728_020 Hb_000188_190--Hb_002728_020 Hb_001437_300 Hb_001437_300 Hb_003788_040--Hb_001437_300 Hb_000590_090 Hb_000590_090 Hb_003788_040--Hb_000590_090 Hb_000680_150 Hb_000680_150 Hb_003788_040--Hb_000680_150 Hb_017098_030 Hb_017098_030 Hb_003788_040--Hb_017098_030 Hb_002875_090 Hb_002875_090 Hb_003788_040--Hb_002875_090 Hb_002619_010 Hb_002619_010 Hb_003788_040--Hb_002619_010 Hb_000849_150 Hb_000849_150 Hb_000544_040--Hb_000849_150 Hb_005725_070 Hb_005725_070 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_004032_460--Hb_000173_370 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46709 0.708733 0.158834 0.498792 5.50853 1.5849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92044 1.45129 0.655068 0.29722 0.984324

CAGE analysis