Hb_000668_050

Information

Type -
Description -
Location Contig668: 37508-41309
Sequence    

Annotation

kegg
ID rcu:RCOM_1034140
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_002513886.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q6MEW4
description 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1
trembl
ID B9RJG7
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_1034140 PE=3 SV=1
Gene Ontology
ID GO:0004619
description phosphoglycerate mutase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53299: 38575-39062 , PASA_asmbl_53300: 39083-41116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_050 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_001473_060 0.1009605403 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
3 Hb_007684_010 0.1010713475 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003189_010 0.1164397648 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
5 Hb_000714_060 0.1247107808 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
6 Hb_003754_020 0.125497177 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000951_090 0.1334972504 - - Oligopeptide transporter, putative [Ricinus communis]
8 Hb_032260_060 0.1356954064 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
9 Hb_007017_100 0.1403676145 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
10 Hb_003124_050 0.1405153902 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
11 Hb_002818_170 0.1405642075 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
12 Hb_004330_040 0.141494819 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005731_070 0.1423034175 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005168_020 0.1440283684 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
15 Hb_009767_050 0.1462323634 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
16 Hb_002072_040 0.1481602754 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
17 Hb_002097_180 0.1492065571 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
18 Hb_000490_040 0.1499983289 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
19 Hb_006277_030 0.1503716416 - - conserved hypothetical protein [Ricinus communis]
20 Hb_093218_010 0.1505854192 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]

Gene co-expression network

sample Hb_000668_050 Hb_000668_050 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_003189_010 Hb_003189_010 Hb_000668_050--Hb_003189_010 Hb_000714_060 Hb_000714_060 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000951_090 Hb_000951_090 Hb_000668_050--Hb_000951_090 Hb_032260_060 Hb_032260_060 Hb_001473_060--Hb_032260_060 Hb_004330_040 Hb_004330_040 Hb_001473_060--Hb_004330_040 Hb_001473_060--Hb_003754_020 Hb_001473_060--Hb_000714_060 Hb_093218_010 Hb_093218_010 Hb_001473_060--Hb_093218_010 Hb_003124_050 Hb_003124_050 Hb_007684_010--Hb_003124_050 Hb_007684_010--Hb_003754_020 Hb_002097_180 Hb_002097_180 Hb_007684_010--Hb_002097_180 Hb_007684_010--Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_007684_010--Hb_002818_170 Hb_003189_010--Hb_002818_170 Hb_006277_030 Hb_006277_030 Hb_003189_010--Hb_006277_030 Hb_002025_380 Hb_002025_380 Hb_003189_010--Hb_002025_380 Hb_003189_010--Hb_002097_180 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000714_060--Hb_093218_010 Hb_000714_060--Hb_032260_060 Hb_000714_060--Hb_000951_090 Hb_000714_060--Hb_005731_070 Hb_001104_020 Hb_001104_020 Hb_000714_060--Hb_001104_020 Hb_003754_020--Hb_004330_040 Hb_003754_020--Hb_032260_060 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_000951_090--Hb_093218_010 Hb_000951_090--Hb_001104_020 Hb_000152_120 Hb_000152_120 Hb_000951_090--Hb_000152_120 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_002805_180 Hb_002805_180 Hb_000951_090--Hb_002805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013615 0.318248 13.9469 21.2486 0.0263921 0.0255661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0930443 0.0244002 0.0458536 14.9588 8.27162

CAGE analysis