Hb_000668_060

Information

Type -
Description -
Location Contig668: 44751-46975
Sequence    

Annotation

kegg
ID rcu:RCOM_1034130
description Pollen-specific protein C13 precursor, putative
nr
ID XP_002513885.1
description Pollen-specific protein C13 precursor, putative [Ricinus communis]
swissprot
ID Q9LX15
description Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana GN=DFC PE=2 SV=1
trembl
ID B9RJG6
description Pollen-specific protein C13, putative OS=Ricinus communis GN=RCOM_1034130 PE=4 SV=1
Gene Ontology
ID GO:0005615
description pollen-specific protein c13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53301: 44777-46927 , PASA_asmbl_53303: 46169-46568
cDNA
(Sanger)
(ID:Location)		 003_A18.ab1: 44885-46900 , 010_H07.ab1: 44956-46927 , 019_B18.ab1: 44951-46927 , 031_C05.ab1: 44868-46927 , 035_F11.ab1: 44881-46927 , 045_P19.ab1: 44905-46927 , 047_O06.ab1: 44783-46798 , 049_E08.ab1: 44972-46927 , 052_D08.ab1: 44947-46927 , 052_G06.ab1: 44937-46927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_060 0.0 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
2 Hb_000035_080 0.1289664102 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
3 Hb_000320_050 0.1365775126 - - bcr-associated protein, bap, putative [Ricinus communis]
4 Hb_003964_080 0.1456513741 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
5 Hb_000260_650 0.1511768388 - - PREDICTED: protein PFC0760c [Jatropha curcas]
6 Hb_074399_010 0.1529176823 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
7 Hb_000940_210 0.153072114 - - cyclophilin [Hevea brasiliensis]
8 Hb_000703_160 0.1534460298 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
9 Hb_000959_190 0.1553937477 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
10 Hb_005511_130 0.1555472406 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
11 Hb_002498_240 0.1559861019 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
12 Hb_004567_010 0.1587430026 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
13 Hb_001123_110 0.159503543 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003688_010 0.1600376431 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
15 Hb_003605_040 0.160670741 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
16 Hb_002374_270 0.162152449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_640 0.1633071939 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
18 Hb_000282_050 0.1641112057 - - calcineurin B, putative [Ricinus communis]
19 Hb_000960_090 0.1645138236 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005144_210 0.1653249654 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000668_060 Hb_000668_060 Hb_000035_080 Hb_000035_080 Hb_000668_060--Hb_000035_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_000260_650 Hb_000260_650 Hb_000668_060--Hb_000260_650 Hb_074399_010 Hb_074399_010 Hb_000668_060--Hb_074399_010 Hb_000940_210 Hb_000940_210 Hb_000668_060--Hb_000940_210 Hb_004125_010 Hb_004125_010 Hb_000035_080--Hb_004125_010 Hb_000035_080--Hb_074399_010 Hb_002783_220 Hb_002783_220 Hb_000035_080--Hb_002783_220 Hb_000258_220 Hb_000258_220 Hb_000035_080--Hb_000258_220 Hb_000000_330 Hb_000000_330 Hb_000035_080--Hb_000000_330 Hb_000438_090 Hb_000438_090 Hb_000320_050--Hb_000438_090 Hb_000009_610 Hb_000009_610 Hb_000320_050--Hb_000009_610 Hb_003605_040 Hb_003605_040 Hb_000320_050--Hb_003605_040 Hb_164945_010 Hb_164945_010 Hb_000320_050--Hb_164945_010 Hb_010812_070 Hb_010812_070 Hb_000320_050--Hb_010812_070 Hb_000753_160 Hb_000753_160 Hb_003964_080--Hb_000753_160 Hb_000134_120 Hb_000134_120 Hb_003964_080--Hb_000134_120 Hb_007919_110 Hb_007919_110 Hb_003964_080--Hb_007919_110 Hb_002217_320 Hb_002217_320 Hb_003964_080--Hb_002217_320 Hb_005511_130 Hb_005511_130 Hb_003964_080--Hb_005511_130 Hb_002374_270 Hb_002374_270 Hb_003964_080--Hb_002374_270 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000288_090 Hb_000288_090 Hb_000260_650--Hb_000288_090 Hb_006970_130 Hb_006970_130 Hb_000260_650--Hb_006970_130 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_074399_010--Hb_000258_220 Hb_003687_080 Hb_003687_080 Hb_074399_010--Hb_003687_080 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.8695 120.738 613.371 578.783 109.135 79.2354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.386 100.834 56.3243 126.709 65.9081

CAGE analysis