Hb_000668_160

Information

Type -
Description -
Location Contig668: 112259-118468
Sequence    

Annotation

kegg
ID rcu:RCOM_1033950
description sulfate transporter, putative
nr
ID XP_012078104.1
description PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
swissprot
ID Q9FEP7
description Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1
trembl
ID B9RJF8
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_1033950 PE=4 SV=1
Gene Ontology
ID GO:0005886
description sulfate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53309: 113766-115209 , PASA_asmbl_53310: 114787-115136 , PASA_asmbl_53311: 117924-118468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_160 0.0 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
2 Hb_000819_010 0.0826219274 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
3 Hb_000280_110 0.0935406936 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_010921_060 0.0986860394 - - ATP binding protein, putative [Ricinus communis]
5 Hb_009803_030 0.1109064244 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
6 Hb_002600_010 0.117763527 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_107543_010 0.1234460791 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
8 Hb_002239_020 0.1252089283 - - MLO, putative [Theobroma cacao]
9 Hb_011344_140 0.126004727 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
10 Hb_000521_290 0.1261522547 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
11 Hb_002783_300 0.1279578716 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000343_260 0.1286557846 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
13 Hb_002045_220 0.13027982 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
14 Hb_009247_030 0.132910339 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_073119_010 0.1348524521 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000579_220 0.1378008086 - - transcription factor, putative [Ricinus communis]
17 Hb_007237_090 0.1391686031 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000563_120 0.1440842413 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
19 Hb_000465_380 0.1447418531 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_084127_010 0.1451030923 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000668_160 Hb_000668_160 Hb_000819_010 Hb_000819_010 Hb_000668_160--Hb_000819_010 Hb_000280_110 Hb_000280_110 Hb_000668_160--Hb_000280_110 Hb_010921_060 Hb_010921_060 Hb_000668_160--Hb_010921_060 Hb_009803_030 Hb_009803_030 Hb_000668_160--Hb_009803_030 Hb_002600_010 Hb_002600_010 Hb_000668_160--Hb_002600_010 Hb_107543_010 Hb_107543_010 Hb_000668_160--Hb_107543_010 Hb_000819_010--Hb_009803_030 Hb_000819_010--Hb_000280_110 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_002276_100 Hb_002276_100 Hb_000280_110--Hb_002276_100 Hb_000280_110--Hb_009803_030 Hb_000280_110--Hb_002600_010 Hb_046101_010 Hb_046101_010 Hb_000280_110--Hb_046101_010 Hb_000280_110--Hb_107543_010 Hb_002239_020 Hb_002239_020 Hb_010921_060--Hb_002239_020 Hb_000465_380 Hb_000465_380 Hb_010921_060--Hb_000465_380 Hb_011344_140 Hb_011344_140 Hb_010921_060--Hb_011344_140 Hb_000521_290 Hb_000521_290 Hb_010921_060--Hb_000521_290 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_009803_030--Hb_046101_010 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002600_010--Hb_002276_100 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_107543_010--Hb_046101_010 Hb_001894_040 Hb_001894_040 Hb_107543_010--Hb_001894_040 Hb_107543_010--Hb_009803_030 Hb_000489_020 Hb_000489_020 Hb_107543_010--Hb_000489_020 Hb_074312_020 Hb_074312_020 Hb_107543_010--Hb_074312_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0433093 14.3336 2.11277 2.60283 0.00654981 0.178653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.031752 0.012493 0.238626 5.31953 3.6458

CAGE analysis