Hb_000668_170

Information

Type -
Description -
Location Contig668: 125242-128842
Sequence    

Annotation

kegg
ID rcu:RCOM_1033840
description sulfate transporter, putative
nr
ID XP_002513876.1
description sulfate transporter, putative [Ricinus communis]
swissprot
ID O04722
description Sulfate transporter 2.1 OS=Arabidopsis thaliana GN=SULTR2;1 PE=2 SV=1
trembl
ID B9RJF7
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_1033840 PE=4 SV=1
Gene Ontology
ID GO:0016021
description low affinity sulfate transporter 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53312: 125205-128888 , PASA_asmbl_53313: 125205-127641 , PASA_asmbl_53314: 125506-128888 , PASA_asmbl_53315: 125506-126484
cDNA
(Sanger)
(ID:Location)		 017_E19.ab1: 125205-125992 , 025_L13.ab1: 128093-128858 , 033_C09.ab1: 125205-126538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_170 0.0 - - sulfate transporter, putative [Ricinus communis]
2 Hb_005183_010 0.123847121 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
3 Hb_000029_280 0.1301864776 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
4 Hb_010142_040 0.139134621 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
5 Hb_001213_140 0.1427035283 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
6 Hb_000827_090 0.1506930425 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
7 Hb_000087_180 0.1508953628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003602_080 0.1574169955 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
9 Hb_010012_020 0.1589284327 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000221_280 0.1597036531 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
11 Hb_000417_230 0.1608444335 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000777_020 0.1629340666 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
13 Hb_012395_260 0.163976878 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
14 Hb_003071_040 0.1642012586 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
15 Hb_000731_020 0.1645520177 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
16 Hb_098175_010 0.1659216728 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_000506_130 0.1681903059 - - DGCR14-related family protein [Populus trichocarpa]
18 Hb_127628_010 0.1692596493 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_000796_200 0.1712630246 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
20 Hb_002107_080 0.1723495736 - - JHL20J20.3 [Jatropha curcas]

Gene co-expression network

sample Hb_000668_170 Hb_000668_170 Hb_005183_010 Hb_005183_010 Hb_000668_170--Hb_005183_010 Hb_000029_280 Hb_000029_280 Hb_000668_170--Hb_000029_280 Hb_010142_040 Hb_010142_040 Hb_000668_170--Hb_010142_040 Hb_001213_140 Hb_001213_140 Hb_000668_170--Hb_001213_140 Hb_000827_090 Hb_000827_090 Hb_000668_170--Hb_000827_090 Hb_000087_180 Hb_000087_180 Hb_000668_170--Hb_000087_180 Hb_005183_010--Hb_000087_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_004968_050 Hb_004968_050 Hb_005183_010--Hb_004968_050 Hb_000417_230 Hb_000417_230 Hb_005183_010--Hb_000417_230 Hb_017434_020 Hb_017434_020 Hb_005183_010--Hb_017434_020 Hb_000029_280--Hb_005183_010 Hb_000029_280--Hb_000087_180 Hb_127628_010 Hb_127628_010 Hb_000029_280--Hb_127628_010 Hb_107495_050 Hb_107495_050 Hb_000029_280--Hb_107495_050 Hb_187697_010 Hb_187697_010 Hb_000029_280--Hb_187697_010 Hb_010142_040--Hb_000827_090 Hb_032920_040 Hb_032920_040 Hb_010142_040--Hb_032920_040 Hb_010142_040--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280 Hb_001213_140--Hb_000827_090 Hb_001213_140--Hb_000777_020 Hb_001213_140--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000827_090--Hb_000777_020 Hb_000827_090--Hb_000221_280 Hb_000827_090--Hb_032920_040 Hb_000827_090--Hb_000731_020 Hb_000087_180--Hb_017434_020 Hb_000087_180--Hb_004968_050 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000087_180--Hb_000417_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.404506 34.8917 7.12907 21.0697 0.461031 2.08969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198491 0 0 0.358933 1.06419

CAGE analysis