Hb_000668_180

Information

Type -
Description -
Location Contig668: 132244-133353
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16490g
description POPTRDRAFT_801228; hypothetical protein
nr
ID XP_002307397.1
description hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9H767
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s16490g PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53317: 132499-133321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_180 0.0 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
2 Hb_033363_030 0.0793927191 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
3 Hb_000027_110 0.0814272471 - - wall-associated kinase, putative [Ricinus communis]
4 Hb_004979_080 0.0853619746 - - kinase, putative [Ricinus communis]
5 Hb_000951_070 0.0972400182 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
6 Hb_010402_040 0.1012998269 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
7 Hb_031069_040 0.1015049233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_096224_050 0.1086176355 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
9 Hb_003299_060 0.1126406892 - - nitrate transporter, putative [Ricinus communis]
10 Hb_004117_320 0.1155336146 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
11 Hb_000644_010 0.1176223413 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
12 Hb_007904_110 0.1186997324 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
13 Hb_002226_090 0.1196426397 - - Stachyose synthase precursor, putative [Ricinus communis]
14 Hb_003643_080 0.1196443448 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_000373_160 0.1197179619 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
16 Hb_005337_140 0.1207948626 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
17 Hb_020367_040 0.1279252801 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
18 Hb_005867_050 0.1302650493 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
19 Hb_004979_070 0.1316980598 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
20 Hb_004291_050 0.1324124148 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]

Gene co-expression network

sample Hb_000668_180 Hb_000668_180 Hb_033363_030 Hb_033363_030 Hb_000668_180--Hb_033363_030 Hb_000027_110 Hb_000027_110 Hb_000668_180--Hb_000027_110 Hb_004979_080 Hb_004979_080 Hb_000668_180--Hb_004979_080 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040 Hb_096224_050 Hb_096224_050 Hb_033363_030--Hb_096224_050 Hb_033363_030--Hb_004979_080 Hb_033363_030--Hb_000027_110 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_000027_110--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_000027_110--Hb_000644_010 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_004979_080--Hb_096224_050 Hb_004979_080--Hb_000644_010 Hb_004979_070 Hb_004979_070 Hb_004979_080--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_004979_080--Hb_007904_110 Hb_000951_070--Hb_010402_040 Hb_089305_040 Hb_089305_040 Hb_000951_070--Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_000951_070--Hb_003796_010 Hb_003440_080 Hb_003440_080 Hb_000951_070--Hb_003440_080 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320 Hb_010402_040--Hb_004117_320 Hb_002226_090 Hb_002226_090 Hb_010402_040--Hb_002226_090 Hb_005867_050 Hb_005867_050 Hb_010402_040--Hb_005867_050 Hb_020367_040 Hb_020367_040 Hb_010402_040--Hb_020367_040 Hb_000373_160 Hb_000373_160 Hb_031069_040--Hb_000373_160 Hb_001269_030 Hb_001269_030 Hb_031069_040--Hb_001269_030 Hb_031069_040--Hb_000116_090 Hb_005337_140 Hb_005337_140 Hb_031069_040--Hb_005337_140 Hb_000307_150 Hb_000307_150 Hb_031069_040--Hb_000307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.53676 6.24793 3.44512 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0996153 0 0 0.346466 20.2154

CAGE analysis