Hb_000670_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig670: 60982-61848
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12410g
description POPTRDRAFT_644073; hypothetical protein
nr
ID KDP41681.1
description hypothetical protein JCGZ_16088 [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067KZQ6
description MYB family protein OS=Jatropha curcas GN=JCGZ_16088 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53399: 60466-62005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_050 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
2 Hb_000146_050 0.0967971263 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
3 Hb_000982_060 0.1028313899 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_004473_040 0.1051990606 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004310_020 0.1055474049 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
6 Hb_010712_030 0.1075125096 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000060_040 0.113551301 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
8 Hb_012322_020 0.1148125248 - - -
9 Hb_001377_270 0.1149493047 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
10 Hb_003893_030 0.1169985464 - - Protein yrdA, putative [Ricinus communis]
11 Hb_001287_080 0.1170868486 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000003_540 0.1173553902 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
13 Hb_000099_080 0.1179074448 - - kinesin light chain, putative [Ricinus communis]
14 Hb_074715_010 0.1181819615 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
15 Hb_000406_080 0.1191317042 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
16 Hb_005784_040 0.1193676676 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
17 Hb_006816_350 0.1195398228 - - PREDICTED: syntaxin-43 [Jatropha curcas]
18 Hb_000179_220 0.1196819846 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
19 Hb_005023_010 0.1206520799 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
20 Hb_002235_210 0.1212321754 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]

Gene co-expression network

sample Hb_000670_050 Hb_000670_050 Hb_000146_050 Hb_000146_050 Hb_000670_050--Hb_000146_050 Hb_000982_060 Hb_000982_060 Hb_000670_050--Hb_000982_060 Hb_004473_040 Hb_004473_040 Hb_000670_050--Hb_004473_040 Hb_004310_020 Hb_004310_020 Hb_000670_050--Hb_004310_020 Hb_010712_030 Hb_010712_030 Hb_000670_050--Hb_010712_030 Hb_000060_040 Hb_000060_040 Hb_000670_050--Hb_000060_040 Hb_090051_030 Hb_090051_030 Hb_000146_050--Hb_090051_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_001633_130 Hb_001633_130 Hb_000146_050--Hb_001633_130 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_000025_180 Hb_000025_180 Hb_004473_040--Hb_000025_180 Hb_003108_020 Hb_003108_020 Hb_004473_040--Hb_003108_020 Hb_000125_080 Hb_000125_080 Hb_004473_040--Hb_000125_080 Hb_001922_050 Hb_001922_050 Hb_004473_040--Hb_001922_050 Hb_000406_080 Hb_000406_080 Hb_004473_040--Hb_000406_080 Hb_000417_040 Hb_000417_040 Hb_004473_040--Hb_000417_040 Hb_004310_020--Hb_010712_030 Hb_004310_020--Hb_000205_300 Hb_004310_020--Hb_158062_010 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_000152_380 Hb_000152_380 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_007059_010 Hb_007059_010 Hb_010712_030--Hb_007059_010 Hb_000060_040--Hb_004310_020 Hb_000780_060 Hb_000780_060 Hb_000060_040--Hb_000780_060 Hb_000060_040--Hb_010712_030 Hb_000796_210 Hb_000796_210 Hb_000060_040--Hb_000796_210 Hb_001358_030 Hb_001358_030 Hb_000060_040--Hb_001358_030 Hb_000343_160 Hb_000343_160 Hb_000060_040--Hb_000343_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5107 11.7523 6.42966 24.7642 16.7505 13.7955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3664 17.3854 12.3539 5.99668 5.60304

CAGE analysis