Hb_000670_070

Information

Type -
Description -
Location Contig670: 116679-117847
Sequence    

Annotation

kegg
ID rcu:RCOM_1589130
description hypothetical protein
nr
ID XP_012068286.1
description PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
swissprot
ID Q8L9J9
description Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2
trembl
ID A0A067KZS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53400: 116077-116394 , PASA_asmbl_53401: 117100-117718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_070 0.0 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
2 Hb_000608_190 0.0581516484 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
3 Hb_000424_140 0.0642395669 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_007620_020 0.0702531709 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_005842_010 0.0727510381 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000654_020 0.0847521892 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
7 Hb_002245_060 0.0849363017 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
8 Hb_000477_090 0.0940022889 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
9 Hb_001657_020 0.094451094 - - heat shock family protein [Populus trichocarpa]
10 Hb_000002_110 0.0958401819 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
11 Hb_020956_030 0.0958628377 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
12 Hb_005539_150 0.0965370581 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
13 Hb_005183_050 0.096578645 - - hypothetical protein RCOM_1590900 [Ricinus communis]
14 Hb_003358_030 0.0981766663 - - ankyrin-kinase, putative [Ricinus communis]
15 Hb_009421_070 0.0982884692 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
16 Hb_001541_200 0.0996630644 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
17 Hb_007163_110 0.1001016551 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_089124_010 0.1007796412 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
19 Hb_001433_090 0.1011673949 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
20 Hb_026549_060 0.1043336909 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_000670_070 Hb_000670_070 Hb_000608_190 Hb_000608_190 Hb_000670_070--Hb_000608_190 Hb_000424_140 Hb_000424_140 Hb_000670_070--Hb_000424_140 Hb_007620_020 Hb_007620_020 Hb_000670_070--Hb_007620_020 Hb_005842_010 Hb_005842_010 Hb_000670_070--Hb_005842_010 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_002245_060 Hb_002245_060 Hb_000670_070--Hb_002245_060 Hb_000608_190--Hb_007620_020 Hb_000608_190--Hb_000424_140 Hb_003358_030 Hb_003358_030 Hb_000608_190--Hb_003358_030 Hb_089124_010 Hb_089124_010 Hb_000608_190--Hb_089124_010 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_005569_010 Hb_005569_010 Hb_000424_140--Hb_005569_010 Hb_000424_140--Hb_005842_010 Hb_000424_140--Hb_000958_090 Hb_009421_070 Hb_009421_070 Hb_000424_140--Hb_009421_070 Hb_007620_020--Hb_089124_010 Hb_004837_080 Hb_004837_080 Hb_007620_020--Hb_004837_080 Hb_007620_020--Hb_002245_060 Hb_000122_230 Hb_000122_230 Hb_007620_020--Hb_000122_230 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_007163_110 Hb_007163_110 Hb_005842_010--Hb_007163_110 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_010883_160 Hb_010883_160 Hb_000654_020--Hb_010883_160 Hb_000809_010 Hb_000809_010 Hb_000654_020--Hb_000809_010 Hb_005539_150 Hb_005539_150 Hb_000654_020--Hb_005539_150 Hb_008441_010 Hb_008441_010 Hb_000654_020--Hb_008441_010 Hb_000654_020--Hb_002245_060 Hb_000402_060 Hb_000402_060 Hb_000654_020--Hb_000402_060 Hb_002245_060--Hb_000122_230 Hb_001408_200 Hb_001408_200 Hb_002245_060--Hb_001408_200 Hb_002245_060--Hb_005539_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.208494 1.24568 2.7271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.326166 4.29005

CAGE analysis