Hb_000670_110

Information

Type -
Description -
Location Contig670: 147868-149486
Sequence    

Annotation

kegg
ID rcu:RCOM_1589270
description l-asparaginase, putative (EC:3.5.1.1)
nr
ID XP_002510160.1
description l-asparaginase, putative [Ricinus communis]
swissprot
ID Q8GXG1
description Probable isoaspartyl peptidase/L-asparaginase 2 OS=Arabidopsis thaliana GN=At3g16150 PE=2 SV=2
trembl
ID B9R767
description L-asparaginase, putative OS=Ricinus communis GN=RCOM_1589270 PE=4 SV=1
Gene Ontology
ID GO:0004067
description probable isoaspartyl peptidase l-asparaginase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53402: 147715-149530
cDNA
(Sanger)
(ID:Location)		 025_D19.ab1: 148115-149530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_110 0.0 - - l-asparaginase, putative [Ricinus communis]
2 Hb_011970_040 0.136253668 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000106_070 0.1364925329 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
4 Hb_003052_200 0.1371684619 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
5 Hb_004195_110 0.1422741783 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
6 Hb_011618_040 0.1476150897 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001248_030 0.1569844471 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003119_070 0.1625567509 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_001408_050 0.168896254 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001951_090 0.1704059429 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_003299_010 0.1741140705 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_001951_030 0.1771479462 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
13 Hb_002783_320 0.180482797 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
14 Hb_002917_030 0.1870651441 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
15 Hb_000181_160 0.1871427908 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
16 Hb_007416_150 0.1882986255 - - sarcosine oxidase, putative [Ricinus communis]
17 Hb_133636_010 0.1899227793 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
18 Hb_002917_020 0.1916063068 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
19 Hb_001863_460 0.1943986284 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
20 Hb_000976_440 0.1946112749 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000670_110 Hb_000670_110 Hb_011970_040 Hb_011970_040 Hb_000670_110--Hb_011970_040 Hb_000106_070 Hb_000106_070 Hb_000670_110--Hb_000106_070 Hb_003052_200 Hb_003052_200 Hb_000670_110--Hb_003052_200 Hb_004195_110 Hb_004195_110 Hb_000670_110--Hb_004195_110 Hb_011618_040 Hb_011618_040 Hb_000670_110--Hb_011618_040 Hb_001248_030 Hb_001248_030 Hb_000670_110--Hb_001248_030 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_011970_040--Hb_001248_030 Hb_000106_070--Hb_003052_200 Hb_000106_070--Hb_011618_040 Hb_003299_010 Hb_003299_010 Hb_000106_070--Hb_003299_010 Hb_000106_070--Hb_011970_040 Hb_003119_070 Hb_003119_070 Hb_000106_070--Hb_003119_070 Hb_070277_010 Hb_070277_010 Hb_003052_200--Hb_070277_010 Hb_003052_200--Hb_001248_030 Hb_003052_200--Hb_011970_040 Hb_002304_140 Hb_002304_140 Hb_003052_200--Hb_002304_140 Hb_004195_110--Hb_001248_030 Hb_004195_110--Hb_002304_140 Hb_004657_040 Hb_004657_040 Hb_004195_110--Hb_004657_040 Hb_007416_150 Hb_007416_150 Hb_004195_110--Hb_007416_150 Hb_000181_160 Hb_000181_160 Hb_004195_110--Hb_000181_160 Hb_000556_110 Hb_000556_110 Hb_011618_040--Hb_000556_110 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_011618_040--Hb_003119_070 Hb_011618_040--Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_001248_030--Hb_002304_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7232 275.368 17.2096 51.4276 11.6208 6.21188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9266 16.2665 4.18721 345.071 2.0774

CAGE analysis