Hb_000671_030

Information

Type -
Description -
Location Contig671: 48996-56018
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09820g
description POPTRDRAFT_643775; hypothetical protein
nr
ID XP_012067887.1
description PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
swissprot
ID Q9C9Q8
description Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2
trembl
ID A0A067L2D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15800 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable pectin methyltransferase qua2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53410: 49083-56100
cDNA
(Sanger)
(ID:Location)		 011_D20.ab1: 49099-50703 , 023_D10.ab1: 49099-50539 , 046_F18.ab1: 49099-50655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_030 0.0 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
2 Hb_003777_130 0.0722377108 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
3 Hb_012760_030 0.0790729784 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
4 Hb_003849_220 0.0898110242 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
5 Hb_001623_110 0.0927993557 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
6 Hb_017948_030 0.0958176664 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
7 Hb_007919_110 0.0976327596 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
8 Hb_000258_420 0.0990113862 - - sucrose transporter 2A [Hevea brasiliensis]
9 Hb_000890_030 0.1001458279 - - plastid CUL1 [Hevea brasiliensis]
10 Hb_000523_030 0.1038471739 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_000671_080 0.1067010532 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
12 Hb_006022_010 0.1081570796 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
13 Hb_033152_090 0.1103133369 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
14 Hb_000640_190 0.1108289027 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_000815_310 0.1110263206 - - protein kinase, putative [Ricinus communis]
16 Hb_000203_270 0.1119524296 - - alpha-xylosidase, putative [Ricinus communis]
17 Hb_003018_030 0.1124990886 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
18 Hb_003599_030 0.1151030533 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
19 Hb_004375_110 0.1165067089 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
20 Hb_000300_550 0.117047977 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]

Gene co-expression network

sample Hb_000671_030 Hb_000671_030 Hb_003777_130 Hb_003777_130 Hb_000671_030--Hb_003777_130 Hb_012760_030 Hb_012760_030 Hb_000671_030--Hb_012760_030 Hb_003849_220 Hb_003849_220 Hb_000671_030--Hb_003849_220 Hb_001623_110 Hb_001623_110 Hb_000671_030--Hb_001623_110 Hb_017948_030 Hb_017948_030 Hb_000671_030--Hb_017948_030 Hb_007919_110 Hb_007919_110 Hb_000671_030--Hb_007919_110 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_003777_130--Hb_000815_310 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_033152_090 Hb_033152_090 Hb_003777_130--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_003777_130--Hb_000640_190 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_012760_030--Hb_001623_110 Hb_000890_030 Hb_000890_030 Hb_012760_030--Hb_000890_030 Hb_012760_030--Hb_007919_110 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_000671_080 Hb_000671_080 Hb_003849_220--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003849_220--Hb_001257_100 Hb_000261_280 Hb_000261_280 Hb_003849_220--Hb_000261_280 Hb_005288_140 Hb_005288_140 Hb_003849_220--Hb_005288_140 Hb_003849_220--Hb_003777_130 Hb_000300_550 Hb_000300_550 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_006022_010 Hb_006022_010 Hb_001623_110--Hb_006022_010 Hb_007800_020 Hb_007800_020 Hb_001623_110--Hb_007800_020 Hb_000805_210 Hb_000805_210 Hb_001623_110--Hb_000805_210 Hb_001691_040 Hb_001691_040 Hb_017948_030--Hb_001691_040 Hb_000912_100 Hb_000912_100 Hb_017948_030--Hb_000912_100 Hb_003599_030 Hb_003599_030 Hb_017948_030--Hb_003599_030 Hb_000203_270 Hb_000203_270 Hb_017948_030--Hb_000203_270 Hb_000622_340 Hb_000622_340 Hb_017948_030--Hb_000622_340 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9587 40.7759 35.7973 48.9522 19.3108 11.5414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.106 7.49835 8.3705 14.3025 21.2565

CAGE analysis