Hb_000671_050

Information

Type -
Description -
Location Contig671: 71423-72637
Sequence    

Annotation

kegg
ID rcu:RCOM_1036140
description hypothetical protein
nr
ID XP_012067886.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067KZ03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15799 PE=4 SV=1
Gene Ontology
ID GO:0006979
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53411: 71445-71554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_050 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_000035_320 0.0635503512 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
3 Hb_000976_410 0.0674351865 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_001100_060 0.0815833425 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
5 Hb_000876_070 0.082715138 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_004724_080 0.0849975168 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002105_040 0.0850385742 - - -
8 Hb_000003_250 0.0862756213 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_000928_210 0.0864514356 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
10 Hb_005463_100 0.086964306 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
11 Hb_000703_350 0.0870644366 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
12 Hb_005289_030 0.0883383186 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
13 Hb_000477_060 0.0889791583 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_032202_190 0.0908061505 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
15 Hb_004254_120 0.0908320033 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000258_270 0.0925454086 - - PREDICTED: cullin-3A [Jatropha curcas]
17 Hb_005663_060 0.0926358114 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
18 Hb_017224_030 0.0928540275 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
19 Hb_002739_100 0.0928589626 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_003605_090 0.0930743054 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_050 Hb_000671_050 Hb_000035_320 Hb_000035_320 Hb_000671_050--Hb_000035_320 Hb_000976_410 Hb_000976_410 Hb_000671_050--Hb_000976_410 Hb_001100_060 Hb_001100_060 Hb_000671_050--Hb_001100_060 Hb_000876_070 Hb_000876_070 Hb_000671_050--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_000671_050--Hb_004724_080 Hb_002105_040 Hb_002105_040 Hb_000671_050--Hb_002105_040 Hb_000035_320--Hb_000976_410 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150 Hb_005490_030 Hb_005490_030 Hb_000976_410--Hb_005490_030 Hb_000172_290 Hb_000172_290 Hb_000976_410--Hb_000172_290 Hb_004218_110 Hb_004218_110 Hb_000976_410--Hb_004218_110 Hb_000976_410--Hb_148644_010 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_002046_190 Hb_002046_190 Hb_001100_060--Hb_002046_190 Hb_000173_290 Hb_000173_290 Hb_001100_060--Hb_000173_290 Hb_001959_070 Hb_001959_070 Hb_001100_060--Hb_001959_070 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_004724_080--Hb_000876_070 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_000175_460 Hb_000175_460 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_002105_040--Hb_005663_060 Hb_002105_040--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5332 8.03577 4.21918 11.6976 8.01534 12.2805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3888 15.7531 17.0908 7.46764 10.5492

CAGE analysis