Hb_000671_060

Information

Type -
Description -
Location Contig671: 73215-76694
Sequence    

Annotation

kegg
ID rcu:RCOM_1036030
description protein binding protein, putative
nr
ID XP_002513932.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID P45969
description Protein phosphatase 1 regulatory subunit SDS22 homolog OS=Caenorhabditis elegans GN=sds-22 PE=3 SV=1
trembl
ID B9RJL3
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1036030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53414: 73230-76636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_060 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_003090_150 0.0914933441 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
3 Hb_000163_230 0.0996118782 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
4 Hb_002311_140 0.1032382662 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
5 Hb_012305_140 0.1102017886 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
6 Hb_001196_080 0.1102640994 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
7 Hb_000261_280 0.1138016182 - - BnaA10g23810D [Brassica napus]
8 Hb_000803_180 0.1148849863 - - hexokinase [Manihot esculenta]
9 Hb_020805_100 0.1169274684 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
10 Hb_006615_030 0.1185895118 - - prolyl oligopeptidase family protein [Populus trichocarpa]
11 Hb_000139_180 0.1222683509 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
12 Hb_005394_010 0.122514051 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
13 Hb_005694_130 0.1244013813 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
14 Hb_000640_190 0.1258421055 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_001396_070 0.125962814 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000454_140 0.1270580463 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
17 Hb_001009_120 0.1282220309 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_152910_010 0.1285972557 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
19 Hb_000732_070 0.1294355119 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_002609_190 0.129580583 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_060 Hb_000671_060 Hb_003090_150 Hb_003090_150 Hb_000671_060--Hb_003090_150 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_001571_030 Hb_001571_030 Hb_003090_150--Hb_001571_030 Hb_002030_110 Hb_002030_110 Hb_003090_150--Hb_002030_110 Hb_001894_160 Hb_001894_160 Hb_003090_150--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_003090_150--Hb_011671_110 Hb_033930_010 Hb_033930_010 Hb_003090_150--Hb_033930_010 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_085364_010 Hb_085364_010 Hb_002311_140--Hb_085364_010 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_002311_140--Hb_000261_280 Hb_002311_140--Hb_003078_030 Hb_002311_140--Hb_000163_230 Hb_005694_130 Hb_005694_130 Hb_012305_140--Hb_005694_130 Hb_003992_180 Hb_003992_180 Hb_012305_140--Hb_003992_180 Hb_012305_140--Hb_000454_140 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_000692_120 Hb_000692_120 Hb_001196_080--Hb_000692_120 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_001196_080--Hb_003090_150 Hb_005054_310 Hb_005054_310 Hb_001196_080--Hb_005054_310 Hb_001196_080--Hb_002311_140 Hb_000261_280--Hb_000803_180 Hb_000418_050 Hb_000418_050 Hb_000261_280--Hb_000418_050 Hb_003777_130 Hb_003777_130 Hb_000261_280--Hb_003777_130 Hb_000796_120 Hb_000796_120 Hb_000261_280--Hb_000796_120 Hb_033152_090 Hb_033152_090 Hb_000261_280--Hb_033152_090 Hb_004319_050 Hb_004319_050 Hb_000261_280--Hb_004319_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1537 176.262 149.277 92.7925 67.4804 38.6558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.197 22.3461 16.627 26.0005 53.298

CAGE analysis