Hb_000671_100

Information

Type -
Description -
Location Contig671: 125160-129663
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06410g
description hypothetical protein
nr
ID XP_006372939.1
description hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
swissprot
ID B9DFG5
description PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana GN=PTI13 PE=1 SV=1
trembl
ID A9PGH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06410g PE=2 SV=1
Gene Ontology
ID GO:0005622
description pti1-like tyrosine-protein kinase 3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53424: 124280-129593 , PASA_asmbl_53425: 128271-129565 , PASA_asmbl_53426: 125017-125189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_100 0.0 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
2 Hb_024714_030 0.0716326545 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
3 Hb_002014_080 0.0789316529 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
4 Hb_010298_010 0.0845295188 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
5 Hb_035524_030 0.0847674774 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014568_030 0.0874744585 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
7 Hb_009558_020 0.0889500154 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_005288_120 0.0894538192 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
9 Hb_010261_020 0.0907105741 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
10 Hb_000307_200 0.0936327785 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
11 Hb_000442_160 0.0955391856 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_005539_290 0.0967535124 - - unknown [Lotus japonicus]
13 Hb_002023_020 0.0979541303 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
14 Hb_001855_010 0.1000283868 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
15 Hb_001902_050 0.1005521871 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
16 Hb_000186_010 0.1026347152 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
17 Hb_002215_050 0.1040780506 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_003494_240 0.1043155846 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
19 Hb_071736_010 0.1045943155 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
20 Hb_003638_140 0.1064654554 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000671_100 Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_024714_030--Hb_002014_080 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_024714_030--Hb_035524_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_002014_080--Hb_002215_050 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_010298_010--Hb_024714_030 Hb_033642_020 Hb_033642_020 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_019613_020 Hb_019613_020 Hb_035524_030--Hb_019613_020 Hb_000085_280 Hb_000085_280 Hb_035524_030--Hb_000085_280 Hb_005288_120 Hb_005288_120 Hb_035524_030--Hb_005288_120 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_009558_020--Hb_010261_020 Hb_009558_020--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
201.826 41.0402 34.3559 64.8797 183.678 415.372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
210.177 96.1969 177.036 66.6997 29.7245

CAGE analysis