Hb_000671_120

Information

Type -
Description -
Location Contig671: 173947-177560
Sequence    

Annotation

kegg
ID rcu:RCOM_0575180
description Vesicle transport protein GOT1B, putative
nr
ID KDP42835.1
description hypothetical protein JCGZ_23777 [Jatropha curcas]
swissprot
ID Q9CR60
description Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
trembl
ID A0A067LEA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23777 PE=4 SV=1
Gene Ontology
ID GO:0016192
description vesicle transport protein got1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53431: 174255-177775 , PASA_asmbl_53432: 174299-177604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_120 0.0 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
2 Hb_004669_030 0.089396409 - - -
3 Hb_132180_010 0.1065178673 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
4 Hb_001220_010 0.1161939518 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
5 Hb_000342_160 0.1191088858 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
6 Hb_001233_020 0.120180216 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
7 Hb_011037_020 0.1307484516 - - unknown [Picea sitchensis]
8 Hb_011214_100 0.131342109 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
9 Hb_000635_070 0.1349149547 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
10 Hb_001163_040 0.1383491689 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
11 Hb_001396_250 0.1401049155 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
12 Hb_000125_020 0.1413541308 transcription factor TF Family: mTERF -
13 Hb_000015_070 0.1479467101 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
14 Hb_000215_200 0.1481485629 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
15 Hb_011512_050 0.1541425032 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
16 Hb_002078_260 0.156728657 - - unknown [Populus trichocarpa]
17 Hb_080601_020 0.157719659 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
18 Hb_000481_050 0.1607604173 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
19 Hb_000340_520 0.165878107 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
20 Hb_082006_010 0.1663240913 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000671_120 Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_000671_120--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000671_120--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_001233_020 Hb_001233_020 Hb_000671_120--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_000635_070 Hb_000635_070 Hb_004669_030--Hb_000635_070 Hb_004669_030--Hb_001233_020 Hb_004669_030--Hb_132180_010 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_002078_260 Hb_002078_260 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_001233_020 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_080601_020 Hb_080601_020 Hb_001220_010--Hb_080601_020 Hb_001220_010--Hb_001233_020 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230 Hb_000342_160--Hb_000635_070 Hb_011214_100 Hb_011214_100 Hb_000342_160--Hb_011214_100 Hb_082006_010 Hb_082006_010 Hb_000342_160--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000342_160--Hb_000125_010 Hb_000342_160--Hb_004669_030 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_011037_020--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94422 2.98005 3.0418 60.6617 5.37307 33.4186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0389 24.8443 12.638 5.77246 2.63987

CAGE analysis