Hb_000671_130

Information

Type -
Description -
Location Contig671: 192294-202014
Sequence    

Annotation

kegg
ID tcc:TCM_021551
description Nucleotide-sugar transporter family protein isoform 1
nr
ID XP_012066201.1
description PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
swissprot
ID Q8GY97
description CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1
trembl
ID A0A067LFG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23776 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53433: 196748-218108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_130 0.0 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
2 Hb_122636_010 0.0981608461 - - dienelactone hydrolase family protein [Populus trichocarpa]
3 Hb_091349_010 0.1092618968 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
4 Hb_003207_020 0.1109630394 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
5 Hb_033152_070 0.1109735755 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
6 Hb_000107_110 0.1118001156 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_048476_060 0.1198116388 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
8 Hb_000062_090 0.1223080386 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
9 Hb_002660_110 0.1243722657 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
10 Hb_001894_070 0.1246282902 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
11 Hb_003207_150 0.1260185057 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_010042_020 0.1291179745 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
13 Hb_001486_040 0.1292430198 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
14 Hb_003994_300 0.1304352265 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001609_040 0.1312893485 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
16 Hb_001584_240 0.1318686695 - - ADP-ribosylation factor [Gossypium barbadense]
17 Hb_004158_020 0.1330051541 - - Rab1 [Hevea brasiliensis]
18 Hb_004525_040 0.1334148281 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
19 Hb_000402_130 0.1345391653 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
20 Hb_032143_020 0.1351235215 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]

Gene co-expression network

sample Hb_000671_130 Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_091349_010 Hb_091349_010 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_003207_020--Hb_033152_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_033152_070--Hb_010042_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_033152_070--Hb_000402_130 Hb_000107_110--Hb_001894_070 Hb_000107_110--Hb_004881_030 Hb_000107_110--Hb_010042_020 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_000107_110--Hb_003052_180 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_048476_060--Hb_003207_020 Hb_000110_050 Hb_000110_050 Hb_048476_060--Hb_000110_050 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65946 3.01142 5.49815 24.885 2.08909 3.178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99932 5.31882 5.25167 4.23698 9.39772

CAGE analysis