Hb_000671_170

Information

Type -
Description -
Location Contig671: 239012-241793
Sequence    

Annotation

kegg
ID rcu:RCOM_0574920
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002529764.1
description kinase, putative [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9SUU5
description Kinase, putative OS=Ricinus communis GN=RCOM_0574920 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53437: 239061-241694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_170 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000868_100 0.1384998536 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
3 Hb_000671_160 0.1388915857 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
4 Hb_000672_150 0.179868245 - - Patatin T5 precursor, putative [Ricinus communis]
5 Hb_001959_120 0.1837637364 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
6 Hb_001113_030 0.1943579764 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
7 Hb_008173_030 0.1983017337 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
8 Hb_089032_010 0.2020089373 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
9 Hb_001794_060 0.2033787112 - - conserved hypothetical protein [Ricinus communis]
10 Hb_101733_040 0.2085294598 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
11 Hb_001616_110 0.2085545565 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_000021_050 0.2133937682 - - PREDICTED: uncharacterized protein LOC105645238 [Jatropha curcas]
13 Hb_031527_060 0.2167871416 - - glutamate decarboxylase, putative [Ricinus communis]
14 Hb_000699_230 0.2193476133 - - Ankyrin repeat family protein, putative [Theobroma cacao]
15 Hb_031862_040 0.2196520042 - - purine transporter, putative [Ricinus communis]
16 Hb_001268_120 0.2223888107 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000983_080 0.2225637174 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
18 Hb_002701_220 0.2240683847 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
19 Hb_005433_060 0.2256215766 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
20 Hb_002572_050 0.2266609104 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000671_170 Hb_000671_170 Hb_000868_100 Hb_000868_100 Hb_000671_170--Hb_000868_100 Hb_000671_160 Hb_000671_160 Hb_000671_170--Hb_000671_160 Hb_000672_150 Hb_000672_150 Hb_000671_170--Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000671_170--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000671_170--Hb_001113_030 Hb_008173_030 Hb_008173_030 Hb_000671_170--Hb_008173_030 Hb_000694_060 Hb_000694_060 Hb_000868_100--Hb_000694_060 Hb_000868_100--Hb_000671_160 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_002284_190 Hb_002284_190 Hb_000671_160--Hb_002284_190 Hb_000671_160--Hb_000694_060 Hb_002660_060 Hb_002660_060 Hb_000671_160--Hb_002660_060 Hb_002805_020 Hb_002805_020 Hb_000671_160--Hb_002805_020 Hb_000672_150--Hb_001959_120 Hb_000672_150--Hb_001113_030 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000672_150--Hb_008173_030 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_011716_050 Hb_011716_050 Hb_001959_120--Hb_011716_050 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_001113_030--Hb_008173_030 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23183 25.6764 3.40801 6.47467 1.03343 0.358965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84392 15.6664 8.20857 13.9863 6.00779

CAGE analysis