Hb_000672_040

Information

Type -
Description -
Location Contig672: 42908-64161
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09550g
description POPTRDRAFT_558693; hypothetical protein
nr
ID XP_012065811.1
description PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
swissprot
ID Q9LEY4
description HUA2-like protein 1 OS=Arabidopsis thaliana GN=At5g08230 PE=2 SV=1
trembl
ID A0A067L7W9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24239 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53475: 31952-43465 , PASA_asmbl_53476: 44418-46667 , PASA_asmbl_53477: 46779-48655 , PASA_asmbl_53478: 54307-55677 , PASA_asmbl_53479: 55717-64012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_040 0.0 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
2 Hb_005186_040 0.0597732253 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
3 Hb_007441_160 0.0603745402 - - RNA binding protein, putative [Ricinus communis]
4 Hb_005736_020 0.0658471852 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
5 Hb_001227_080 0.0708802303 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_011671_410 0.071856519 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
7 Hb_005486_030 0.0724535605 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
8 Hb_001999_290 0.0752382103 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
9 Hb_009767_080 0.0756546121 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
10 Hb_012244_020 0.0777771647 - - calpain, putative [Ricinus communis]
11 Hb_001865_070 0.0785339824 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
12 Hb_001648_020 0.0797807155 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
13 Hb_062226_070 0.0806453498 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
14 Hb_004182_050 0.0815222239 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
15 Hb_000017_220 0.081553884 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
16 Hb_001205_230 0.0824385873 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
17 Hb_005488_170 0.0833741357 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
18 Hb_001488_180 0.0839079436 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
19 Hb_004079_060 0.0840535777 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
20 Hb_000599_190 0.084267929 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]

Gene co-expression network

sample Hb_000672_040 Hb_000672_040 Hb_005186_040 Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_007441_160 Hb_007441_160 Hb_000672_040--Hb_007441_160 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_005186_040--Hb_007441_160 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_001999_290 Hb_001999_290 Hb_007441_160--Hb_001999_290 Hb_000640_040 Hb_000640_040 Hb_007441_160--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_007441_160--Hb_001865_070 Hb_007441_160--Hb_012244_020 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_001157_240 Hb_001157_240 Hb_005736_020--Hb_001157_240 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_019337_020 Hb_019337_020 Hb_001227_080--Hb_019337_020 Hb_007818_010 Hb_007818_010 Hb_001227_080--Hb_007818_010 Hb_002639_080 Hb_002639_080 Hb_001227_080--Hb_002639_080 Hb_001417_030 Hb_001417_030 Hb_001227_080--Hb_001417_030 Hb_000388_090 Hb_000388_090 Hb_001227_080--Hb_000388_090 Hb_000170_130 Hb_000170_130 Hb_011671_410--Hb_000170_130 Hb_011671_410--Hb_005736_020 Hb_011671_410--Hb_000204_120 Hb_062226_070 Hb_062226_070 Hb_011671_410--Hb_062226_070 Hb_011671_410--Hb_001999_290 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_009767_080 Hb_009767_080 Hb_005486_030--Hb_009767_080 Hb_009898_010 Hb_009898_010 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90061 5.87815 2.07927 3.09503 3.22901 4.10907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6047 2.97094 3.74577 4.18795 7.02175

CAGE analysis