Hb_000672_070

Information

Type -
Description -
Location Contig672: 146198-155807
Sequence    

Annotation

kegg
ID rcu:RCOM_0654320
description protein binding protein, putative
nr
ID XP_012069243.1
description PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9S5T4
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0654320 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at3g12360-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_070 0.0 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
2 Hb_101733_020 0.0092254435 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
3 Hb_081445_010 0.0098320877 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
4 Hb_048826_010 0.0110893434 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
5 Hb_002582_090 0.0137537784 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
6 Hb_132148_010 0.0234450771 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
7 Hb_067197_020 0.0299757832 - - -
8 Hb_010896_010 0.0411037394 - - -
9 Hb_001268_360 0.0481847094 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
10 Hb_003766_030 0.0489597931 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
11 Hb_001373_120 0.0533519975 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
12 Hb_002127_010 0.0573238041 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
13 Hb_008637_010 0.0576280073 - - Major latex protein, putative [Ricinus communis]
14 Hb_000264_200 0.06408999 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
15 Hb_000120_140 0.064360071 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
16 Hb_011671_300 0.0653078766 - - 14.3 kDa oleosin [Jatropha curcas]
17 Hb_168436_010 0.0658486594 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
18 Hb_021409_060 0.0705552846 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
19 Hb_004712_100 0.0790777738 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
20 Hb_001198_070 0.0842422327 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000672_070 Hb_000672_070 Hb_101733_020 Hb_101733_020 Hb_000672_070--Hb_101733_020 Hb_081445_010 Hb_081445_010 Hb_000672_070--Hb_081445_010 Hb_048826_010 Hb_048826_010 Hb_000672_070--Hb_048826_010 Hb_002582_090 Hb_002582_090 Hb_000672_070--Hb_002582_090 Hb_132148_010 Hb_132148_010 Hb_000672_070--Hb_132148_010 Hb_067197_020 Hb_067197_020 Hb_000672_070--Hb_067197_020 Hb_101733_020--Hb_081445_010 Hb_101733_020--Hb_048826_010 Hb_101733_020--Hb_067197_020 Hb_101733_020--Hb_002582_090 Hb_010896_010 Hb_010896_010 Hb_101733_020--Hb_010896_010 Hb_081445_010--Hb_067197_020 Hb_081445_010--Hb_048826_010 Hb_081445_010--Hb_002582_090 Hb_081445_010--Hb_010896_010 Hb_048826_010--Hb_002582_090 Hb_048826_010--Hb_132148_010 Hb_003766_030 Hb_003766_030 Hb_048826_010--Hb_003766_030 Hb_002582_090--Hb_132148_010 Hb_002582_090--Hb_003766_030 Hb_132148_010--Hb_003766_030 Hb_001373_120 Hb_001373_120 Hb_132148_010--Hb_001373_120 Hb_132148_010--Hb_101733_020 Hb_067197_020--Hb_010896_010 Hb_001268_360 Hb_001268_360 Hb_067197_020--Hb_001268_360 Hb_002127_010 Hb_002127_010 Hb_067197_020--Hb_002127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.026469 0.00736832 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis